BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_06537
(295 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76780.F 585 e-167
At3g47730.F PTA.sd.9860.singlet 34 0.55
PTA.sd.9249.C1 nseq=4 34 0.55
PTA.sd.562.C1 nseq=4 34 0.55
PTA.sd.2900.C1 nseq=23 34 0.55
PTA.sd.16404.C1 nseq=5 34 0.55
PTA.sd.13801.C1 nseq=4 34 0.55
PTA.sd.10743.C1 nseq=3 34 0.55
At4g04730.F 34 0.55
PTA.sd.7578.C1 nseq=26 32 2.2
PTA.sd.7103.C1 nseq=31 32 2.2
PTA.sd.5837.C1 nseq=18 32 2.2
PTA.sd.4573.C1 nseq=18 32 2.2
PTA.sd.17908.C1 nseq=20 32 2.2
PTA.sd.16198.C1 nseq=6 32 2.2
>At1g76780.F
Length = 5616
Score = 585 bits (295), Expect = e-167
Identities = 295/295 (100%)
Strand = Plus / Plus
Query: 1 catataagtgaaagagtgcggaacgagatggcgaagagaattctgcaggtggagtccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4636 catataagtgaaagagtgcggaacgagatggcgaagagaattctgcaggtggagtccaaa 4695
Query: 61 gctaatgatggtagctcaaaaaagaatgaaactgaaggacaagaatctacgggattgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4696 gctaatgatggtagctcaaaaaagaatgaaactgaaggacaagaatctacgggattgaga 4755
Query: 121 gggcgaaagaaaagggaaaatcatcaagagctagtggaactagaaactagtgatcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4756 gggcgaaagaaaagggaaaatcatcaagagctagtggaactagaaactagtgatcagaag 4815
Query: 181 aaaggagtgaaagaggatgaggttgttgggaaagcagagataatagaagatgaatatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4816 aaaggagtgaaagaggatgaggttgttgggaaagcagagataatagaagatgaatatgat 4875
Query: 241 agctcaaggaagattcacgaacatgaagaacgtatgtctgataaactagaaatgc 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4876 agctcaaggaagattcacgaacatgaagaacgtatgtctgataaactagaaatgc 4930
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 gatggtagctcaaaaa 82
||||||||||||||||
Sbjct: 5314 gatggtagctcaaaaa 5329
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 tctgataaactagaa 291
|||||||||||||||
Sbjct: 1246 tctgataaactagaa 1260
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 tctgataaactagaa 291
|||||||||||||||
Sbjct: 838 tctgataaactagaa 852
>At3g47730.F PTA.sd.9860.singlet
Length = 3036
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 245 caaggaagattcacgaa 261
|||||||||||||||||
Sbjct: 269 caaggaagattcacgaa 253
>PTA.sd.9249.C1 nseq=4
Length = 1979
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 caaagctaatgatggta 73
|||||||||||||||||
Sbjct: 1287 caaagctaatgatggta 1271
>PTA.sd.562.C1 nseq=4
Length = 1757
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 216 agagataatagaagatg 232
|||||||||||||||||
Sbjct: 452 agagataatagaagatg 468
>PTA.sd.2900.C1 nseq=23
Length = 2217
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24 cgagatggcgaagagaa 40
|||||||||||||||||
Sbjct: 1734 cgagatggcgaagagaa 1750
>PTA.sd.16404.C1 nseq=5
Length = 1608
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 223 atagaagatgaatatga 239
|||||||||||||||||
Sbjct: 1310 atagaagatgaatatga 1294
>PTA.sd.13801.C1 nseq=4
Length = 505
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 56 ccaaagctaatgatggt 72
|||||||||||||||||
Sbjct: 309 ccaaagctaatgatggt 293
>PTA.sd.10743.C1 nseq=3
Length = 769
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 176 agaagaaaggagtgaaagagg 196
||||||||||||| |||||||
Sbjct: 115 agaagaaaggagttaaagagg 95
>At4g04730.F
Length = 423
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 gggaaaatcatcaagag 150
|||||||||||||||||
Sbjct: 246 gggaaaatcatcaagag 262
>PTA.sd.7578.C1 nseq=26
Length = 860
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 caaaaaagaatgaaac 92
||||||||||||||||
Sbjct: 723 caaaaaagaatgaaac 708
>PTA.sd.7103.C1 nseq=31
Length = 1217
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 206 ttgggaaagcagagat 221
||||||||||||||||
Sbjct: 801 ttgggaaagcagagat 816
>PTA.sd.5837.C1 nseq=18
Length = 1645
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 171 tgatcagaagaaagga 186
||||||||||||||||
Sbjct: 693 tgatcagaagaaagga 708
>PTA.sd.4573.C1 nseq=18
Length = 2951
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 131 aaagggaaaatcatcaagag 150
|||| |||||||||||||||
Sbjct: 1982 aaagagaaaatcatcaagag 1963
>PTA.sd.17908.C1 nseq=20
Length = 1079
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 226 gaagatgaatatgata 241
||||||||||||||||
Sbjct: 961 gaagatgaatatgata 976
>PTA.sd.16198.C1 nseq=6
Length = 537
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 215 cagagataatagaaga 230
||||||||||||||||
Sbjct: 400 cagagataatagaaga 385
>PTA.sd.15117.C2 nseq=5
Length = 1093
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 221 taatagaagatgaatatgat 240
|||| |||||||||||||||
Sbjct: 128 taatcgaagatgaatatgat 147
>PTA.sd.13191.C1 nseq=4
Length = 1973
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 126 aaagaaaagggaaaat 141
||||||||||||||||
Sbjct: 1808 aaagaaaagggaaaat 1793
>PTA.sd.1173.C1 nseq=6
Length = 1982
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 89 aaactgaaggacaaga 104
||||||||||||||||
Sbjct: 282 aaactgaaggacaaga 297
>PTA.sd.11342.C1 nseq=29
Length = 2789
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 82 aagaatgaaactgaag 97
||||||||||||||||
Sbjct: 1632 aagaatgaaactgaag 1617
>PTA.sd.11255.C1 nseq=13
Length = 1782
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 agagtgcggaacgaga 28
||||||||||||||||
Sbjct: 1416 agagtgcggaacgaga 1431
>PTA.sd.10298.C1 nseq=2
Length = 914
Score = 32.2 bits (16), Expect = 2.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 65 atgatggtagctcaaaaaagaatg 88
||||||||||| ||||| ||||||
Sbjct: 754 atgatggtagcccaaaagagaatg 777
>At5g08310.F
Length = 3843
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 176 agaagaaaggagtgaa 191
||||||||||||||||
Sbjct: 3653 agaagaaaggagtgaa 3668
>At4g00260.F
Length = 1473
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 129 gaaaagggaaaatcat 144
||||||||||||||||
Sbjct: 838 gaaaagggaaaatcat 853
>At2g38830.F
Length = 420
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 agctcaaggaagattc 256
||||||||||||||||
Sbjct: 134 agctcaaggaagattc 149
>PTA.sd.9306.C1 nseq=2
Length = 5946
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 atataagtgaaagag 16
|||||||||||||||
Sbjct: 5357 atataagtgaaagag 5371
>PTA.sd.8524.C1 nseq=9
Length = 2333
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 cgagatggcgaagag 38
|||||||||||||||
Sbjct: 1879 cgagatggcgaagag 1893
>PTA.sd.8145.C1 nseq=8
Length = 925
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 177 gaagaaaggagtgaaagag 195
||||||||||||| |||||
Sbjct: 649 gaagaaaggagtgcaagag 667
>PTA.sd.8089.C1 nseq=110
Length = 1808
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 tagaagatgaatatg 238
|||||||||||||||
Sbjct: 539 tagaagatgaatatg 553
>PTA.sd.8050.C1 nseq=13
Length = 1831
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 aggttgttgggaaag 214
|||||||||||||||
Sbjct: 716 aggttgttgggaaag 730
>PTA.sd.7396.C1 nseq=52
Length = 1091
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 177 gaagaaaggagtgaa 191
|||||||||||||||
Sbjct: 73 gaagaaaggagtgaa 87
>PTA.sd.7173.C1 nseq=8
Length = 3290
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 agaggatgaggttgt 206
|||||||||||||||
Sbjct: 1100 agaggatgaggttgt 1114
>PTA.sd.6484.C1 nseq=6
Length = 764
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 238 gatagctcaaggaag 252
|||||||||||||||
Sbjct: 203 gatagctcaaggaag 189
>PTA.sd.6377.C1 nseq=11
Length = 3062
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 attcacgaacatgaa 267
|||||||||||||||
Sbjct: 2822 attcacgaacatgaa 2808
>PTA.sd.6018.C1 nseq=7
Length = 1133
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 57 caaagctaatgatggtagc 75
||||||| |||||||||||
Sbjct: 375 caaagctgatgatggtagc 393
>PTA.sd.5551.C1 nseq=13
Length = 1730
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 176 agaagaaaggagtgaaaga 194
|||||||||||| ||||||
Sbjct: 1438 agaagaaaggagagaaaga 1456
>PTA.sd.5076.C1 nseq=15
Length = 1245
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 aaaagggaaaatcat 144
|||||||||||||||
Sbjct: 947 aaaagggaaaatcat 933
>PTA.sd.50.C1 nseq=12
Length = 1594
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 227 aagatgaatatgata 241
|||||||||||||||
Sbjct: 811 aagatgaatatgata 797
>PTA.sd.4745.C1 nseq=6
Length = 1264
Score = 30.2 bits (15), Expect = 8.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 20 ggaacgagatggcgaagagaatt 42
||||| ||| |||||||||||||
Sbjct: 82 ggaacaagacggcgaagagaatt 60
>PTA.sd.4616.C1 nseq=5
Length = 869
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 ggaactagaaactag 170
|||||||||||||||
Sbjct: 21 ggaactagaaactag 35
>PTA.sd.4318.C1 nseq=5
Length = 1903
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 tagaagatgaatatg 238
|||||||||||||||
Sbjct: 532 tagaagatgaatatg 546
>PTA.sd.4159.C1 nseq=3
Length = 1956
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 gaagatgaatatgat 240
|||||||||||||||
Sbjct: 154 gaagatgaatatgat 168
>PTA.sd.3878.C1 nseq=3
Length = 4509
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 264 tgaagaacgtatgtctgat 282
||||||| |||||||||||
Sbjct: 3096 tgaagaaggtatgtctgat 3114
>PTA.sd.3594.C1 nseq=5
Length = 2519
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 aggacaagaatctac 110
|||||||||||||||
Sbjct: 86 aggacaagaatctac 100
>PTA.sd.3521.C1 nseq=4
Length = 3742
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 aagaatgaaactgaa 96
|||||||||||||||
Sbjct: 3311 aagaatgaaactgaa 3325
>PTA.sd.3514.C1 nseq=6
Length = 1194
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 98 gacaagaatctacgggatt 116
||||||||||||| |||||
Sbjct: 1152 gacaagaatctactggatt 1134
>PTA.sd.2777.C1 nseq=9
Length = 1818
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 174 tcagaagaaaggagtgaaa 192
||||||||||||| |||||
Sbjct: 244 tcagaagaaaggattgaaa 262
>PTA.sd.2383.C1 nseq=9
Length = 733
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 gaagatgaatatgat 240
|||||||||||||||
Sbjct: 273 gaagatgaatatgat 287
>PTA.sd.1869.C1 nseq=4
Length = 1765
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 74 gctcaaaaaagaatgaaac 92
||||||||||||| |||||
Sbjct: 72 gctcaaaaaagaaagaaac 90
>PTA.sd.1854.C1 nseq=31
Length = 2310
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 150 gctagtggaactagaaact 168
|||| ||||||||||||||
Sbjct: 1273 gctaatggaactagaaact 1255
>PTA.sd.17559.C1 nseq=9
Length = 2221
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 agaagatgaatatga 239
|||||||||||||||
Sbjct: 1797 agaagatgaatatga 1811
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 295
length of database: 39,126,732
effective HSP length: 16
effective length of query: 279
effective length of database: 38,700,540
effective search space: 10797450660
effective search space used: 10797450660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)