BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05933
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g36180.F 583 e-166
PTA.sd.2408.C1 nseq=8 349 7e-96
PTA.sd.2407.C1 nseq=7 349 7e-96
PTA.sd.11839.C1 nseq=5 34 0.55
At1g24460.F PTA.sd.1787.singlet 32 2.2
PTA.sd.8030.C1 nseq=2 32 2.2
PTA.sd.7610.C1 nseq=6 32 2.2
PTA.sd.6374.C1 nseq=14 32 2.2
PTA.sd.3954.C1 nseq=5 32 2.2
PTA.sd.16899.C1 nseq=4 32 2.2
PTA.sd.16094.C1 nseq=4 32 2.2
PTA.sd.14450.C1 nseq=17 32 2.2
PTA.sd.11558.C1 nseq=17 32 2.2
PTA.sd.10728.C1 nseq=7 32 2.2
PTA.sd.10283.C1 nseq=4 32 2.2
>At1g36180.F
Length = 7080
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 gcatatgcaaacatcgagcttctccagaaacagattaaaacccgagagaagcaactttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6532 gcatatgcaaacatcgagcttctccagaaacagattaaaacccgagagaagcaactttta 6591
Query: 61 ccagtttatacccaaatcgctaccaaatttgctgaactccatgacacttccatgagaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6592 ccagtttatacccaaatcgctaccaaatttgctgaactccatgacacttccatgagaatg 6651
Query: 121 gctgcaaaaggtgtgatcaaaagtgttgtggaatggagcggctcgcggtcattcttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6652 gctgcaaaaggtgtgatcaaaagtgttgtggaatggagcggctcgcggtcattcttctat 6711
Query: 181 aaaaagctctatcggagaatcgcagagagctctctagtgaggaacataagaaaagcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6712 aaaaagctctatcggagaatcgcagagagctctctagtgaggaacataagaaaagcttct 6771
Query: 241 ggagacatcttatcatataaatctgctatgggtttgattcaggactggttccgc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6772 ggagacatcttatcatataaatctgctatgggtttgattcaggactggttccgc 6825
>PTA.sd.2408.C1 nseq=8
Length = 5833
Score = 349 bits (176), Expect = 7e-96
Identities = 260/288 (90%)
Strand = Plus / Plus
Query: 4 tatgcaaacatcgagcttctccagaaacagattaaaacccgagagaagcaacttttacca 63
|||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||
Sbjct: 5053 tatgcaaacatcgagcttctccagcaacagattaaagcccgagagaaacagcttttacca 5112
Query: 64 gtttatacccaaatcgctaccaaatttgctgaactccatgacacttccatgagaatggct 123
||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 5113 gtttatatccaaatcgccaccaaatttgcagaacttcatgacacttccatgagaatggct 5172
Query: 124 gcaaaaggtgtgatcaaaagtgttgtggaatggagcggctcgcggtcattcttctataaa 183
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 5173 gcaaagggagtgatcaaaagtgttgtggaatggagcggctcgcggtccttcttctacaaa 5232
Query: 184 aagctctatcggagaatcgcagagagctctctagtgaggaacataagaaaagcttctgga 243
|||||| || |||||||||| ||||||||||| |||| ||| ||||| |||| ||||||
Sbjct: 5233 aagctcaataggagaatcgctgagagctctcttgtgaaaaacgtaagagaagcatctgga 5292
Query: 244 gacatcttatcatataaatctgctatgggtttgattcaggactggttc 291
|||| |||| ||||||||||| | ||| || |||||||||| ||||||
Sbjct: 5293 gacaacttagcatataaatcttcaatgcgtctgattcaggattggttc 5340
>PTA.sd.2407.C1 nseq=7
Length = 6791
Score = 349 bits (176), Expect = 7e-96
Identities = 260/288 (90%)
Strand = Plus / Plus
Query: 4 tatgcaaacatcgagcttctccagaaacagattaaaacccgagagaagcaacttttacca 63
|||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||
Sbjct: 6323 tatgcaaacatcgagcttctccagcaacagattaaagcccgagagaaacagcttttacca 6382
Query: 64 gtttatacccaaatcgctaccaaatttgctgaactccatgacacttccatgagaatggct 123
||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 6383 gtttatatccaaatcgccaccaaatttgcagaacttcatgacacttccatgagaatggct 6442
Query: 124 gcaaaaggtgtgatcaaaagtgttgtggaatggagcggctcgcggtcattcttctataaa 183
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 6443 gcaaagggagtgatcaaaagtgttgtggaatggagcggctcgcggtccttcttctacaaa 6502
Query: 184 aagctctatcggagaatcgcagagagctctctagtgaggaacataagaaaagcttctgga 243
|||||| || |||||||||| ||||||||||| |||| ||| ||||| |||| ||||||
Sbjct: 6503 aagctcaataggagaatcgctgagagctctcttgtgaaaaacgtaagagaagcatctgga 6562
Query: 244 gacatcttatcatataaatctgctatgggtttgattcaggactggttc 291
|||| |||| ||||||||||| | ||| || |||||||||| ||||||
Sbjct: 6563 gacaacttagcatataaatcttcaatgcgtctgattcaggattggttc 6610
>PTA.sd.11839.C1 nseq=5
Length = 875
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 139 aaaagtgttgtggaatggagc 159
||||||||||||||| |||||
Sbjct: 417 aaaagtgttgtggaacggagc 437
>At1g24460.F PTA.sd.1787.singlet
Length = 5376
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 243 agacatcttatcatat 258
||||||||||||||||
Sbjct: 4494 agacatcttatcatat 4509
>PTA.sd.8030.C1 nseq=2
Length = 2297
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 ctgcaaaaggtgtgat 137
||||||||||||||||
Sbjct: 653 ctgcaaaaggtgtgat 668
>PTA.sd.7610.C1 nseq=6
Length = 724
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 26 agaaacagattaaaac 41
||||||||||||||||
Sbjct: 416 agaaacagattaaaac 401
>PTA.sd.6374.C1 nseq=14
Length = 5164
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 132 tgtgatcaaaagtgtt 147
||||||||||||||||
Sbjct: 3970 tgtgatcaaaagtgtt 3955
>PTA.sd.3954.C1 nseq=5
Length = 3203
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 ataaaaagctctatcg 194
||||||||||||||||
Sbjct: 301 ataaaaagctctatcg 286
>PTA.sd.16899.C1 nseq=4
Length = 1395
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 cttctccagaaacaga 34
||||||||||||||||
Sbjct: 376 cttctccagaaacaga 391
>PTA.sd.16094.C1 nseq=4
Length = 2343
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 246 catcttatcatataaa 261
||||||||||||||||
Sbjct: 2278 catcttatcatataaa 2263
>PTA.sd.14450.C1 nseq=17
Length = 1435
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 taagaaaagcttctgg 242
||||||||||||||||
Sbjct: 738 taagaaaagcttctgg 753
>PTA.sd.11558.C1 nseq=17
Length = 3639
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 233 aagcttctggagacat 248
||||||||||||||||
Sbjct: 685 aagcttctggagacat 700
>PTA.sd.10728.C1 nseq=7
Length = 3690
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 ttcttctataaaaagc 187
||||||||||||||||
Sbjct: 212 ttcttctataaaaagc 227
>PTA.sd.10283.C1 nseq=4
Length = 1975
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 208 agctctctagtgaggaacat 227
||||||||||||| ||||||
Sbjct: 1080 agctctctagtgaagaacat 1061
>At1g60460.F
Length = 1140
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 ttatcatataaatctg 265
||||||||||||||||
Sbjct: 24 ttatcatataaatctg 39
>At4g21470.F PTA.sd.12341.singlet
Length = 849
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 actccatgacacttc 110
|||||||||||||||
Sbjct: 329 actccatgacacttc 315
>At4g15780.F PTA.sd.11941.singlet
Length = 480
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 aagcttctggagaca 247
|||||||||||||||
Sbjct: 117 aagcttctggagaca 103
>PTA.sd.9616.C1 nseq=13
Length = 917
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 120 ggctgcaaaaggtgtgatc 138
||||| |||||||||||||
Sbjct: 696 ggctggaaaaggtgtgatc 678
>PTA.sd.9183.C1 nseq=5
Length = 1596
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 taaaacccgagagaa 50
|||||||||||||||
Sbjct: 741 taaaacccgagagaa 727
>PTA.sd.8468.C1 nseq=17
Length = 1794
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 aaaagtgttgtggaa 153
|||||||||||||||
Sbjct: 930 aaaagtgttgtggaa 944
>PTA.sd.7137.C1 nseq=13
Length = 2235
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 cagattaaaacccga 45
|||||||||||||||
Sbjct: 2022 cagattaaaacccga 2008
>PTA.sd.6603.C1 nseq=3
Length = 2828
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 tgttgtggaatggag 158
|||||||||||||||
Sbjct: 1740 tgttgtggaatggag 1754
>PTA.sd.6171.C1 nseq=12
Length = 1652
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 tgatcaaaagtgttg 148
|||||||||||||||
Sbjct: 694 tgatcaaaagtgttg 680
>PTA.sd.5979.C1 nseq=2
Length = 2689
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 aaacccgagagaagc 52
|||||||||||||||
Sbjct: 2327 aaacccgagagaagc 2341
>PTA.sd.5952.C1 nseq=7
Length = 1779
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 ttcttctataaaaag 186
|||||||||||||||
Sbjct: 783 ttcttctataaaaag 769
>PTA.sd.5919.C1 nseq=8
Length = 1779
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 aaatttgctgaactc 99
|||||||||||||||
Sbjct: 1301 aaatttgctgaactc 1315
>PTA.sd.590.C1 nseq=5
Length = 3420
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 ggagacatcttatca 255
|||||||||||||||
Sbjct: 2179 ggagacatcttatca 2193
>PTA.sd.574.C1 nseq=3
Length = 3133
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 89 ttgctgaactccatgacac 107
|||| ||||||||||||||
Sbjct: 2795 ttgcagaactccatgacac 2777
>PTA.sd.43.C1 nseq=14
Length = 1124
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 tcgcagagagctctc 214
|||||||||||||||
Sbjct: 261 tcgcagagagctctc 247
>PTA.sd.3681.C1 nseq=15
Length = 3126
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 gagctctctagtgag 221
|||||||||||||||
Sbjct: 732 gagctctctagtgag 746
>PTA.sd.3440.C1 nseq=11
Length = 2887
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 agcttctccagaaac 31
|||||||||||||||
Sbjct: 1107 agcttctccagaaac 1121
>PTA.sd.3398.C1 nseq=2
Length = 2002
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 50 agcaacttttaccagttta 68
||||||| |||||||||||
Sbjct: 123 agcaactgttaccagttta 141
>PTA.sd.17902.C1 nseq=2
Length = 1289
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 ttctccagaaacaga 34
|||||||||||||||
Sbjct: 963 ttctccagaaacaga 949
>PTA.sd.1754.C2 nseq=7
Length = 1308
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 cagtttatacccaaa 76
|||||||||||||||
Sbjct: 455 cagtttatacccaaa 441
>PTA.sd.16751.C2 nseq=6
Length = 3541
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 aaacagattaaaacc 42
|||||||||||||||
Sbjct: 10 aaacagattaaaacc 24
>PTA.sd.16608.C1 nseq=7
Length = 3506
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 41 cccgagagaagcaactttt 59
||||||||||| |||||||
Sbjct: 1940 cccgagagaaggaactttt 1958
>PTA.sd.1628.C1 nseq=7
Length = 1500
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 atcgcagagagctct 213
|||||||||||||||
Sbjct: 1271 atcgcagagagctct 1257
>PTA.sd.15795.C1 nseq=16
Length = 2046
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 tctagtgaggaacat 227
|||||||||||||||
Sbjct: 963 tctagtgaggaacat 977
>PTA.sd.15715.C1 nseq=20
Length = 3196
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 tctccagaaacagat 35
|||||||||||||||
Sbjct: 2091 tctccagaaacagat 2105
>PTA.sd.1569.C1 nseq=8
Length = 2190
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 100 catgacacttccatgagaa 118
||||||||||||| |||||
Sbjct: 1691 catgacacttccaagagaa 1709
>PTA.sd.14677.C1 nseq=7
Length = 1990
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 agcttctccagaaac 31
|||||||||||||||
Sbjct: 692 agcttctccagaaac 706
>PTA.sd.14571.C1 nseq=2
Length = 1005
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 ttctccagaaacaga 34
|||||||||||||||
Sbjct: 801 ttctccagaaacaga 787
>PTA.sd.14174.C1 nseq=2
Length = 1420
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 agagaagcaactttt 59
|||||||||||||||
Sbjct: 654 agagaagcaactttt 640
>PTA.sd.13185.C1 nseq=5
Length = 3474
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 tcattcttctataaa 183
|||||||||||||||
Sbjct: 643 tcattcttctataaa 629
>PTA.sd.11254.C1 nseq=2
Length = 853
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 atcttatcatataaa 261
|||||||||||||||
Sbjct: 826 atcttatcatataaa 840
>PTA.sd.11099.C1 nseq=14
Length = 6712
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 agtgttgtggaatgg 156
|||||||||||||||
Sbjct: 3214 agtgttgtggaatgg 3228
>PTA.sd.10929.C1 nseq=4
Length = 799
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gaaacagattaaaac 41
|||||||||||||||
Sbjct: 701 gaaacagattaaaac 687
>PTA.sd.10430.C1 nseq=2
Length = 2051
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 aagcttctggagaca 247
|||||||||||||||
Sbjct: 1783 aagcttctggagaca 1797
>PTA.sd.10429.C1 nseq=2
Length = 2163
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 gagaatcgcagagag 209
|||||||||||||||
Sbjct: 777 gagaatcgcagagag 791
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)