BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05757
(294 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01030.F 583 e-166
At4g01500.F 40 0.009
PTA.sd.14943.C1 nseq=6 36 0.14
PTA.sd.580.C1 nseq=11 34 0.55
PTA.sd.3651.C1 nseq=5 34 0.55
PTA.sd.17526.C1 nseq=26 34 0.55
PTA.sd.10824.C1 nseq=6 34 0.55
PTA.sd.10072.C1 nseq=15 34 0.55
PTA.sd.8258.C1 nseq=7 32 2.2
PTA.sd.6260.C1 nseq=10 32 2.2
PTA.sd.6211.C1 nseq=3 32 2.2
PTA.sd.3759.C1 nseq=8 32 2.2
PTA.sd.2224.C1 nseq=3 32 2.2
PTA.sd.17046.C1 nseq=95 32 2.2
PTA.sd.15493.C1 nseq=5 32 2.2
>At1g01030.F
Length = 1077
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 tcatccattgccagaatataactccgtcccgattcaccggggcttaaacatcggaaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcatccattgccagaatataactccgtcccgattcaccggggcttaaacatcggaaatca 632
Query: 61 ccaacgttcctattataacacccagcgtcaagagttcgtagggtatggttatgggaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ccaacgttcctattataacacccagcgtcaagagttcgtagggtatggttatgggaattt 692
Query: 121 agctggaaggtgttactacacgggatcaccgttggatcataggaacattgttggatcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agctggaaggtgttactacacgggatcaccgttggatcataggaacattgttggatcaga 752
Query: 181 gccgttggttatagactcagtccctgtggttcccgggagattaactccggtgatgttacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gccgttggttatagactcagtccctgtggttcccgggagattaactccggtgatgttacc 812
Query: 241 gccgcttcctccgcctccttctacggcgggaaagagactaaggctctttggggt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gccgcttcctccgcctccttctacggcgggaaagagactaaggctctttggggt 866
>At4g01500.F
Length = 987
Score = 40.1 bits (20), Expect = 0.009
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 132 gttactacacgggatcaccgttggatca 159
|||||||| | |||||||||||||||||
Sbjct: 623 gttactacgcaggatcaccgttggatca 650
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 tagggtatggttatgg 114
||||||||||||||||
Sbjct: 581 tagggtatggttatgg 596
>PTA.sd.14943.C1 nseq=6
Length = 1883
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 113 gggaatttagctggaaggtgtt 134
|||||||||||||||| |||||
Sbjct: 1280 gggaatttagctggaatgtgtt 1259
>PTA.sd.580.C1 nseq=11
Length = 1757
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 239 ccgccgcttcctccgcc 255
|||||||||||||||||
Sbjct: 153 ccgccgcttcctccgcc 169
>PTA.sd.3651.C1 nseq=5
Length = 15577
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 57 atcaccaacgttcctat 73
|||||||||||||||||
Sbjct: 14022 atcaccaacgttcctat 14006
>PTA.sd.17526.C1 nseq=26
Length = 832
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 239 ccgccgcttcctccgcc 255
|||||||||||||||||
Sbjct: 305 ccgccgcttcctccgcc 321
>PTA.sd.10824.C1 nseq=6
Length = 990
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 239 ccgccgcttcctccgcc 255
|||||||||||||||||
Sbjct: 135 ccgccgcttcctccgcc 151
>PTA.sd.10072.C1 nseq=15
Length = 1726
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 174 gatcagagccgttggtt 190
|||||||||||||||||
Sbjct: 416 gatcagagccgttggtt 400
>PTA.sd.8258.C1 nseq=7
Length = 2219
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 240 cgccgcttcctccgcc 255
||||||||||||||||
Sbjct: 551 cgccgcttcctccgcc 566
>PTA.sd.6260.C1 nseq=10
Length = 2283
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 238 accgccgcttcctccg 253
||||||||||||||||
Sbjct: 173 accgccgcttcctccg 158
>PTA.sd.6211.C1 nseq=3
Length = 1238
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 gatcagagccgttggt 189
||||||||||||||||
Sbjct: 882 gatcagagccgttggt 867
>PTA.sd.3759.C1 nseq=8
Length = 3076
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 247 tcctccgcctccttct 262
||||||||||||||||
Sbjct: 1168 tcctccgcctccttct 1183
>PTA.sd.2224.C1 nseq=3
Length = 3874
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 247 tcctccgcctccttct 262
||||||||||||||||
Sbjct: 1809 tcctccgcctccttct 1824
>PTA.sd.17046.C1 nseq=95
Length = 1404
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 157 tcataggaacattgtt 172
||||||||||||||||
Sbjct: 1199 tcataggaacattgtt 1184
>PTA.sd.15493.C1 nseq=5
Length = 1298
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 238 accgccgcttcctccgcctc 257
||||||| ||||||||||||
Sbjct: 179 accgccgtttcctccgcctc 198
>PTA.sd.14378.C1 nseq=2
Length = 1659
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1 tcatccattgccagaa 16
||||||||||||||||
Sbjct: 107 tcatccattgccagaa 92
>PTA.sd.1271.C1 nseq=35
Length = 1930
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 269 ggaaagagactaaggc 284
||||||||||||||||
Sbjct: 1063 ggaaagagactaaggc 1048
>At1g20490.F
Length = 1593
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 gtccctgtggttcccg 215
||||||||||||||||
Sbjct: 638 gtccctgtggttcccg 623
>PTA.sd.7515.C1 nseq=3
Length = 3675
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 gatgttaccgccgct 246
|||||||||||||||
Sbjct: 274 gatgttaccgccgct 288
>PTA.sd.7016.C1 nseq=14
Length = 2881
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 ctacacgggatcacc 150
|||||||||||||||
Sbjct: 1803 ctacacgggatcacc 1817
>PTA.sd.6925.C1 nseq=11
Length = 1838
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 189 ttatagactcagtccctgt 207
||||| |||||||||||||
Sbjct: 1626 ttatatactcagtccctgt 1644
>PTA.sd.4546.C1 nseq=11
Length = 1758
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 248 cctccgcctccttctacgg 266
|||| ||||||||||||||
Sbjct: 344 cctcagcctccttctacgg 362
>PTA.sd.4030.C1 nseq=4
Length = 1554
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 ggaatttagctggaa 128
|||||||||||||||
Sbjct: 921 ggaatttagctggaa 935
>PTA.sd.325.C1 nseq=2
Length = 1235
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 gatcagagccgttgg 188
|||||||||||||||
Sbjct: 903 gatcagagccgttgg 889
>PTA.sd.1864.C1 nseq=8
Length = 646
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 cttcctccgcctcct 259
|||||||||||||||
Sbjct: 165 cttcctccgcctcct 179
>PTA.sd.18006.C1 nseq=14
Length = 1716
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 gatcagagccgttgg 188
|||||||||||||||
Sbjct: 403 gatcagagccgttgg 389
>PTA.sd.17946.C1 nseq=3
Length = 707
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 gtatggttatgggaa 117
|||||||||||||||
Sbjct: 421 gtatggttatgggaa 435
>PTA.sd.17323.C1 nseq=17
Length = 2892
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 tcagtccctgtggtt 211
|||||||||||||||
Sbjct: 1362 tcagtccctgtggtt 1376
>PTA.sd.17016.C1 nseq=7
Length = 1795
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 aggaacattgttgga 175
|||||||||||||||
Sbjct: 1638 aggaacattgttgga 1652
>PTA.sd.16975.C1 nseq=3
Length = 2701
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 aactccggtgatgtt 237
|||||||||||||||
Sbjct: 928 aactccggtgatgtt 914
>PTA.sd.15688.C1 nseq=9
Length = 1703
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 gatcagagccgttgg 188
|||||||||||||||
Sbjct: 383 gatcagagccgttgg 369
>PTA.sd.15481.C1 nseq=10
Length = 2621
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 catcggaaatcacca 63
|||||||||||||||
Sbjct: 225 catcggaaatcacca 211
>PTA.sd.15040.C1 nseq=14
Length = 3745
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 tatggttatgggaat 118
|||||||||||||||
Sbjct: 721 tatggttatgggaat 735
>PTA.sd.14009.C1 nseq=9
Length = 1579
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 239 ccgccgcttcctccgcctc 257
||||||||||||| |||||
Sbjct: 228 ccgccgcttcctcagcctc 246
>PTA.sd.13851.C1 nseq=8
Length = 1189
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 ccgccgcttcctccg 253
|||||||||||||||
Sbjct: 547 ccgccgcttcctccg 533
>PTA.sd.13494.C1 nseq=8
Length = 874
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 gattaactccggtga 233
|||||||||||||||
Sbjct: 290 gattaactccggtga 276
>PTA.sd.13200.C1 nseq=44
Length = 1447
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 239 ccgccgcttcctccgcctc 257
|||||||||||||| ||||
Sbjct: 311 ccgccgcttcctcctcctc 329
>PTA.sd.12102.C1 nseq=6
Length = 1380
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 atggttatgggaatt 119
|||||||||||||||
Sbjct: 162 atggttatgggaatt 176
>PTA.sd.11804.C1 nseq=9
Length = 1661
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 ccggtgatgttaccg 241
|||||||||||||||
Sbjct: 653 ccggtgatgttaccg 667
>PTA.sd.11292.C1 nseq=15
Length = 2112
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 245 cttcctccgcctcct 259
|||||||||||||||
Sbjct: 574 cttcctccgcctcct 560
>PTA.sd.10666.C1 nseq=9
Length = 1499
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 112 tgggaatttagctggaagg 130
||||||| |||||||||||
Sbjct: 856 tgggaatatagctggaagg 838
>At5g05810.F
Length = 1224
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 238 accgccgcttcctccgcct 256
|||||| ||||||||||||
Sbjct: 108 accgccacttcctccgcct 126
>At5g03435.F
Length = 2238
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 168 ttgttggatcagagccgtt 186
|||||| ||||||||||||
Sbjct: 734 ttgttgcatcagagccgtt 752
>At4g33850.F
Length = 1116
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 ggatcagagccgttg 187
|||||||||||||||
Sbjct: 632 ggatcagagccgttg 646
>At4g19970.F
Length = 2148
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 tcagtccctgtggtt 211
|||||||||||||||
Sbjct: 1562 tcagtccctgtggtt 1548
>At3g61720.F
Length = 2388
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 168 ttgttggatcagagccgtt 186
|||||| ||||||||||||
Sbjct: 752 ttgttgcatcagagccgtt 770
>At2g09980.F
Length = 501
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 aacattgttggatca 178
|||||||||||||||
Sbjct: 35 aacattgttggatca 21
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 294
length of database: 39,126,732
effective HSP length: 16
effective length of query: 278
effective length of database: 38,700,540
effective search space: 10758750120
effective search space used: 10758750120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)