BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05740
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01150.F 589 e-168
PTA.sd.2882.C1 nseq=7 34 0.55
PTA.sd.8079.C1 nseq=6 32 2.2
PTA.sd.2806.C1 nseq=17 32 2.2
PTA.sd.17327.C1 nseq=4 32 2.2
PTA.sd.14911.C1 nseq=3 32 2.2
At4g24070.F 32 2.2
At4g03620.F 32 2.2
At1g20730.F PTA.sd.1519.singlet 30 8.6
PTA.sd.7952.C1 nseq=12 30 8.6
PTA.sd.699.C1 nseq=7 30 8.6
PTA.sd.6598.C1 nseq=17 30 8.6
PTA.sd.646.C1 nseq=5 30 8.6
PTA.sd.4141.C1 nseq=8 30 8.6
PTA.sd.17649.C1 nseq=6 30 8.6
>At1g01150.F
Length = 948
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 gcctcttaagaagcgccactaccttgggacaagtgacactttcagaagctttgagccgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gcctcttaagaagcgccactaccttgggacaagtgacactttcagaagctttgagccgtt 179
Query: 61 gaacgaacacgcatgtattgtatgcgatattgcagacgatggtgtagtaccttgttctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gaacgaacacgcatgtattgtatgcgatattgcagacgatggtgtagtaccttgttctgg 239
Query: 121 gaatgaatgccctctcgctgttcacaggaagtgtgttgagcttgattgtgaagatcctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaatgaatgccctctcgctgttcacaggaagtgtgttgagcttgattgtgaagatcctgc 299
Query: 181 aaccttttactgtccctattgttggtttaaggagcaagctactagatccacggctttgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaccttttactgtccctattgttggtttaaggagcaagctactagatccacggctttgag 359
Query: 241 aacaaggggtgttgcagctgcgaagacccttgttcaatatggatgtagtgagctgag 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aacaaggggtgttgcagctgcgaagacccttgttcaatatggatgtagtgagctgag 416
>PTA.sd.2882.C1 nseq=7
Length = 955
Score = 34.2 bits (17), Expect = 0.55
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 158 gagcttgattgtgaagatcct 178
||||||| |||||||||||||
Sbjct: 442 gagcttggttgtgaagatcct 462
>PTA.sd.8079.C1 nseq=6
Length = 569
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 40 tttcagaagctttgag 55
||||||||||||||||
Sbjct: 93 tttcagaagctttgag 108
>PTA.sd.2806.C1 nseq=17
Length = 2739
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 cactttcagaagcttt 52
||||||||||||||||
Sbjct: 1171 cactttcagaagcttt 1156
>PTA.sd.17327.C1 nseq=4
Length = 3696
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 128 tgccctctcgctgttc 143
||||||||||||||||
Sbjct: 3094 tgccctctcgctgttc 3079
>PTA.sd.14911.C1 nseq=3
Length = 3848
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 cactttcagaagcttt 52
||||||||||||||||
Sbjct: 1403 cactttcagaagcttt 1418
>At4g24070.F
Length = 201
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 223 tagatccacggctttg 238
||||||||||||||||
Sbjct: 99 tagatccacggctttg 84
>At4g03620.F
Length = 1029
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 111 cttgttctgggaatga 126
||||||||||||||||
Sbjct: 1026 cttgttctgggaatga 1011
>At1g20730.F PTA.sd.1519.singlet
Length = 1704
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 cagaagctttgagcc 57
|||||||||||||||
Sbjct: 909 cagaagctttgagcc 895
>PTA.sd.7952.C1 nseq=12
Length = 5996
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 tgtccctattgttgg 205
|||||||||||||||
Sbjct: 136 tgtccctattgttgg 122
>PTA.sd.699.C1 nseq=7
Length = 963
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 ttgcagacgatggtg 104
|||||||||||||||
Sbjct: 244 ttgcagacgatggtg 230
>PTA.sd.6598.C1 nseq=17
Length = 1527
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 tgttcacaggaagtg 153
|||||||||||||||
Sbjct: 1277 tgttcacaggaagtg 1291
>PTA.sd.646.C1 nseq=5
Length = 1620
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 gccactaccttggga 29
|||||||||||||||
Sbjct: 1200 gccactaccttggga 1214
>PTA.sd.4141.C1 nseq=8
Length = 1249
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 ggctttgagaacaag 246
|||||||||||||||
Sbjct: 312 ggctttgagaacaag 298
>PTA.sd.17649.C1 nseq=6
Length = 834
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 caggaagtgtgttga 159
|||||||||||||||
Sbjct: 534 caggaagtgtgttga 548
>PTA.sd.17015.C1 nseq=9
Length = 2368
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 gtagtaccttgttct 118
|||||||||||||||
Sbjct: 2017 gtagtaccttgttct 2003
>PTA.sd.12933.C1 nseq=10
Length = 3472
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 atatggatgtagtga 291
|||||||||||||||
Sbjct: 48 atatggatgtagtga 34
>PTA.sd.1247.C1 nseq=2
Length = 2302
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 acactttcagaagct 50
|||||||||||||||
Sbjct: 118 acactttcagaagct 132
>PTA.sd.11029.C1 nseq=17
Length = 1237
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 ttgaacgaacacgca 73
|||||||||||||||
Sbjct: 285 ttgaacgaacacgca 271
>At5g42840.F
Length = 2016
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 138 ctgttcacaggaagtgtgt 156
||||||||||||| |||||
Sbjct: 125 ctgttcacaggaaatgtgt 143
>At5g37060.F
Length = 2580
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 agacgatggtgtagt 108
|||||||||||||||
Sbjct: 2205 agacgatggtgtagt 2219
>At3g47760.F
Length = 1995
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 tgtagtaccttgttc 117
|||||||||||||||
Sbjct: 231 tgtagtaccttgttc 217
>At2g30940.F
Length = 1338
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 aggaagtgtgttgag 160
|||||||||||||||
Sbjct: 145 aggaagtgtgttgag 131
>At1g20240.F
Length = 1695
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 cagaagctttgagcc 57
|||||||||||||||
Sbjct: 927 cagaagctttgagcc 913
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)