BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05604
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.1016.C1 nseq=10 589 e-168
PTA.sd.11199.C1 nseq=3 34 0.55
PTA.sd.5374.C1 nseq=2 32 2.2
PTA.sd.2669.C1 nseq=7 32 2.2
PTA.sd.15552.C1 nseq=12 32 2.2
PTA.sd.10493.C1 nseq=7 32 2.2
At5g55470.F 32 2.2
At5g37450.F 32 2.2
At1g12030.F PTA.sd.851.singlet 30 8.6
PTA.sd.9488.C1 nseq=54 30 8.6
PTA.sd.8372.C1 nseq=11 30 8.6
PTA.sd.7635.C1 nseq=9 30 8.6
PTA.sd.699.C1 nseq=7 30 8.6
PTA.sd.5380.C1 nseq=23 30 8.6
PTA.sd.3957.C1 nseq=3 30 8.6
>PTA.sd.1016.C1 nseq=10
Length = 724
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 tgctacgtcatcagcattagcacaggagaaatgggggacaaggtcattcataaaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tgctacgtcatcagcattagcacaggagaaatgggggacaaggtcattcataaaggagaa 265
Query: 61 atattttatgccgggactatcacctgaggatgcggcggcgcgtataaaacagacggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atattttatgccgggactatcacctgaggatgcggcggcgcgtataaaacagacggctga 325
Query: 121 aggattaagagacatgagggagatgttggaccacatgtcgtggaggtacgttatattcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggattaagagacatgagggagatgttggaccacatgtcgtggaggtacgttatattcta 385
Query: 181 cataagattgaaacaggcttatctgtctcaggatctcaccaacgccatgaacatcttgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cataagattgaaacaggcttatctgtctcaggatctcaccaacgccatgaacatcttgcc 445
Query: 241 ggagagtcgccggaatgattacgttcaggcggcaaacgagcttgtcgaaaacatgag 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggagagtcgccggaatgattacgttcaggcggcaaacgagcttgtcgaaaacatgag 502
>PTA.sd.11199.C1 nseq=3
Length = 3225
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 47 ttcataaaggagaaata 63
|||||||||||||||||
Sbjct: 503 ttcataaaggagaaata 519
>PTA.sd.5374.C1 nseq=2
Length = 1259
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 279 agcttgtcgaaaacat 294
||||||||||||||||
Sbjct: 1060 agcttgtcgaaaacat 1075
>PTA.sd.2669.C1 nseq=7
Length = 1632
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 gaggatgcggcggcgc 101
||||||||||||||||
Sbjct: 1368 gaggatgcggcggcgc 1383
>PTA.sd.15552.C1 nseq=12
Length = 2342
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 13 agcattagcacaggagaaat 32
|||| |||||||||||||||
Sbjct: 351 agcactagcacaggagaaat 370
>PTA.sd.10493.C1 nseq=7
Length = 1336
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 218 accaacgccatgaacatctt 237
|||||||||||||| |||||
Sbjct: 52 accaacgccatgaatatctt 71
>At5g55470.F
Length = 1590
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 tatcacctgaggatgc 93
||||||||||||||||
Sbjct: 63 tatcacctgaggatgc 48
>At5g37450.F
Length = 2832
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 117 ctgaaggattaagaga 132
||||||||||||||||
Sbjct: 321 ctgaaggattaagaga 306
>At1g12030.F PTA.sd.851.singlet
Length = 888
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 atcttgccggagagt 247
|||||||||||||||
Sbjct: 482 atcttgccggagagt 496
>PTA.sd.9488.C1 nseq=54
Length = 873
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 gccgggactatcacc 84
|||||||||||||||
Sbjct: 384 gccgggactatcacc 370
>PTA.sd.8372.C1 nseq=11
Length = 5373
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 catcagcattagcac 23
|||||||||||||||
Sbjct: 607 catcagcattagcac 593
>PTA.sd.7635.C1 nseq=9
Length = 789
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 aggatgcggcggcgc 101
|||||||||||||||
Sbjct: 479 aggatgcggcggcgc 493
>PTA.sd.699.C1 nseq=7
Length = 963
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 tcataaaggagaaat 62
|||||||||||||||
Sbjct: 437 tcataaaggagaaat 451
>PTA.sd.5380.C1 nseq=23
Length = 1578
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 atgggggacaaggtc 45
|||||||||||||||
Sbjct: 1159 atgggggacaaggtc 1145
>PTA.sd.3957.C1 nseq=3
Length = 3604
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 tgagggagatgttgg 149
|||||||||||||||
Sbjct: 1560 tgagggagatgttgg 1574
>PTA.sd.17219.C1 nseq=17
Length = 2088
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 agacggctgaaggat 125
|||||||||||||||
Sbjct: 1303 agacggctgaaggat 1317
>PTA.sd.16996.C1 nseq=7
Length = 3547
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 127 aagagacatgagggagatg 145
|||||| ||||||||||||
Sbjct: 331 aagagagatgagggagatg 349
>PTA.sd.16253.C1 nseq=19
Length = 1347
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 164 aggtacgttatattc 178
|||||||||||||||
Sbjct: 831 aggtacgttatattc 817
>PTA.sd.13976.C1 nseq=6
Length = 1146
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 ccaacgccatgaaca 233
|||||||||||||||
Sbjct: 421 ccaacgccatgaaca 407
>PTA.sd.12318.C1 nseq=4
Length = 2255
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 ccggaatgattacgt 264
|||||||||||||||
Sbjct: 587 ccggaatgattacgt 573
>PTA.sd.12107.C1 nseq=7
Length = 1553
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gatgcggcggcgcgt 103
|||||||||||||||
Sbjct: 361 gatgcggcggcgcgt 375
>PTA.sd.10548.C1 nseq=14
Length = 1540
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 gagatgttggaccac 154
|||||||||||||||
Sbjct: 939 gagatgttggaccac 925
>PTA.sd.10120.C1 nseq=7
Length = 2512
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 aacagacggctgaag 122
|||||||||||||||
Sbjct: 906 aacagacggctgaag 892
>At4g07930.F
Length = 834
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 cggcaaacgagcttg 284
|||||||||||||||
Sbjct: 110 cggcaaacgagcttg 124
>At3g10680.F
Length = 1473
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 aggagaaatatttta 68
|||||||||||||||
Sbjct: 1471 aggagaaatatttta 1457
>At2g32890.F
Length = 234
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 gaggatgcggcggcg 100
|||||||||||||||
Sbjct: 104 gaggatgcggcggcg 118
>At2g29250.F
Length = 1872
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 catgagggagatgtt 147
|||||||||||||||
Sbjct: 1855 catgagggagatgtt 1841
>At1g67690.F
Length = 2085
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 atgttggaccacatg 157
|||||||||||||||
Sbjct: 1458 atgttggaccacatg 1444
>At1g65780.F
Length = 3198
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 gttggaccacatgtc 159
|||||||||||||||
Sbjct: 887 gttggaccacatgtc 873
>At1g26840.F
Length = 888
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 gatctcaccaacgcc 226
|||||||||||||||
Sbjct: 129 gatctcaccaacgcc 115
>At1g22680.F
Length = 558
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 236 ttgccggagagtcgccgga 254
|||||||||||| ||||||
Sbjct: 145 ttgccggagagttgccgga 127
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)