BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05568
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16800.F 591 e-168
PTA.sd.6758.C1 nseq=9 34 0.56
PTA.sd.5621.C1 nseq=10 34 0.56
PTA.sd.13046.C1 nseq=5 34 0.56
PTA.sd.1133.C1 nseq=12 34 0.56
At4g03500.F 34 0.56
At4g10935.F PTA.sd.11573.singlet 32 2.2
PTA.sd.9235.C1 nseq=14 32 2.2
PTA.sd.8932.C1 nseq=7 32 2.2
PTA.sd.6284.C1 nseq=6 32 2.2
PTA.sd.5007.C1 nseq=9 32 2.2
PTA.sd.17752.C1 nseq=6 32 2.2
PTA.sd.16956.C1 nseq=6 32 2.2
PTA.sd.12009.C1 nseq=2 32 2.2
PTA.sd.10368.C1 nseq=12 32 2.2
>At1g16800.F
Length = 5820
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 gatggctttcaaggcaaagaagttgacatattagtattatccactgtaagagctacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 gatggctttcaaggcaaagaagttgacatattagtattatccactgtaagagctacacat 4941
Query: 61 tcggctcctgatggggtcaatcaaagtcggattggttttgttgcagatgttagacgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 tcggctcctgatggggtcaatcaaagtcggattggttttgttgcagatgttagacgcatg 5001
Query: 121 aatgttgctctcactagagccaaactctccctttgggttttgggtaacacacgaaccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 aatgttgctctcactagagccaaactctccctttgggttttgggtaacacacgaaccttg 5061
Query: 181 caaagagaccataactggggtgctcttgtgaaagatgcaaaagaaagagaagtcatcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5062 caaagagaccataactggggtgctcttgtgaaagatgcaaaagaaagagaagtcatcata 5121
Query: 241 ccagttaagcgaccgtacaactacatgtttggtgagaatgtgatggaacaaaaccatt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5122 ccagttaagcgaccgtacaactacatgtttggtgagaatgtgatggaacaaaaccatt 5179
>PTA.sd.6758.C1 nseq=9
Length = 5048
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 95 gttttgttgcagatgtt 111
|||||||||||||||||
Sbjct: 3338 gttttgttgcagatgtt 3354
>PTA.sd.5621.C1 nseq=10
Length = 2306
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 212 aagatgcaaaagaaagagaag 232
|||| ||||||||||||||||
Sbjct: 1656 aagaagcaaaagaaagagaag 1676
>PTA.sd.13046.C1 nseq=5
Length = 3937
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 118 atgaatgttgctctcac 134
|||||||||||||||||
Sbjct: 3499 atgaatgttgctctcac 3515
>PTA.sd.1133.C1 nseq=12
Length = 1429
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 80 atcaaagtcggattggt 96
|||||||||||||||||
Sbjct: 162 atcaaagtcggattggt 178
>At4g03500.F
Length = 1959
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 218 caaaagaaagagaagtc 234
|||||||||||||||||
Sbjct: 859 caaaagaaagagaagtc 843
>At4g10935.F PTA.sd.11573.singlet
Length = 2673
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 11 aaggcaaagaagttga 26
||||||||||||||||
Sbjct: 817 aaggcaaagaagttga 832
>PTA.sd.9235.C1 nseq=14
Length = 2567
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 cctgatggggtcaatc 82
||||||||||||||||
Sbjct: 1462 cctgatggggtcaatc 1477
>PTA.sd.8932.C1 nseq=7
Length = 1825
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 173 gaaccttgcaaagaga 188
||||||||||||||||
Sbjct: 1188 gaaccttgcaaagaga 1173
>PTA.sd.6284.C1 nseq=6
Length = 2064
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 ttcaaggcaaagaagt 23
||||||||||||||||
Sbjct: 1140 ttcaaggcaaagaagt 1155
>PTA.sd.5007.C1 nseq=9
Length = 1218
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 211 aaagatgcaaaagaaagaga 230
|||| |||||||||||||||
Sbjct: 692 aaagctgcaaaagaaagaga 711
>PTA.sd.17752.C1 nseq=6
Length = 1880
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 217 gcaaaagaaagagaag 232
||||||||||||||||
Sbjct: 1783 gcaaaagaaagagaag 1768
>PTA.sd.16956.C1 nseq=6
Length = 3585
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 272 gtgagaatgtgatgga 287
||||||||||||||||
Sbjct: 611 gtgagaatgtgatgga 626
>PTA.sd.12009.C1 nseq=2
Length = 1764
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 221 aagaaagagaagtcat 236
||||||||||||||||
Sbjct: 1557 aagaaagagaagtcat 1572
>PTA.sd.10368.C1 nseq=12
Length = 2662
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 ggcaaagaagttgaca 28
||||||||||||||||
Sbjct: 1083 ggcaaagaagttgaca 1098
>PTA.sd.9337.C1 nseq=39
Length = 1719
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 aaagatgcaaaagaa 225
|||||||||||||||
Sbjct: 1635 aaagatgcaaaagaa 1621
>PTA.sd.8792.C1 nseq=7
Length = 1033
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 aatgtgatggaacaa 291
|||||||||||||||
Sbjct: 876 aatgtgatggaacaa 890
>PTA.sd.8610.C1 nseq=3
Length = 1079
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 208 gtgaaagatgcaaaagaaa 226
||||| |||||||||||||
Sbjct: 463 gtgaatgatgcaaaagaaa 481
>PTA.sd.8196.C1 nseq=8
Length = 1663
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 gatggaacaaaacca 296
|||||||||||||||
Sbjct: 358 gatggaacaaaacca 344
>PTA.sd.8030.C1 nseq=2
Length = 2297
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 aaggcaaagaagttg 25
|||||||||||||||
Sbjct: 1560 aaggcaaagaagttg 1574
>PTA.sd.7439.C1 nseq=10
Length = 1431
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 aactctccctttggg 157
|||||||||||||||
Sbjct: 1386 aactctccctttggg 1400
>PTA.sd.735.C1 nseq=12
Length = 3778
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 agagaagtcatcata 240
|||||||||||||||
Sbjct: 5 agagaagtcatcata 19
>PTA.sd.699.C1 nseq=7
Length = 963
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 tgcaaagagaccata 193
|||||||||||||||
Sbjct: 402 tgcaaagagaccata 416
>PTA.sd.6650.C1 nseq=9
Length = 2959
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 aaagatgcaaaagaa 225
|||||||||||||||
Sbjct: 1020 aaagatgcaaaagaa 1034
>PTA.sd.646.C1 nseq=5
Length = 1620
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 aaccttgcaaagaga 188
|||||||||||||||
Sbjct: 1496 aaccttgcaaagaga 1482
>PTA.sd.6205.C1 nseq=7
Length = 600
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 atgcaaaagaaagag 229
|||||||||||||||
Sbjct: 430 atgcaaaagaaagag 416
>PTA.sd.5669.C1 nseq=11
Length = 1477
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 atggaacaaaaccat 297
|||||||||||||||
Sbjct: 246 atggaacaaaaccat 260
>PTA.sd.5408.C1 nseq=4
Length = 2213
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 gagccaaactctccc 151
|||||||||||||||
Sbjct: 1727 gagccaaactctccc 1713
>PTA.sd.5185.C1 nseq=8
Length = 2142
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 tcttgtgaaagatgc 218
|||||||||||||||
Sbjct: 1022 tcttgtgaaagatgc 1036
>PTA.sd.4493.C1 nseq=8
Length = 1262
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 ggttttgttgcagat 108
|||||||||||||||
Sbjct: 1129 ggttttgttgcagat 1115
>PTA.sd.3851.C1 nseq=4
Length = 2072
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 caaaagaaagagaag 232
|||||||||||||||
Sbjct: 1645 caaaagaaagagaag 1659
>PTA.sd.322.C1 nseq=7
Length = 1616
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 gatgcaaaagaaaga 228
|||||||||||||||
Sbjct: 1282 gatgcaaaagaaaga 1268
>PTA.sd.3053.C1 nseq=7
Length = 1675
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 actctccctttgggt 158
|||||||||||||||
Sbjct: 138 actctccctttgggt 124
>PTA.sd.2133.C1 nseq=5
Length = 1814
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 283 atggaacaaaaccat 297
|||||||||||||||
Sbjct: 821 atggaacaaaaccat 835
>PTA.sd.18063.C1 nseq=11
Length = 2370
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 278 atgtgatggaacaaa 292
|||||||||||||||
Sbjct: 1181 atgtgatggaacaaa 1195
>PTA.sd.17804.C1 nseq=9
Length = 1955
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 agagccaaactctcc 150
|||||||||||||||
Sbjct: 66 agagccaaactctcc 52
>PTA.sd.17427.C1 nseq=8
Length = 1517
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 276 gaatgtgatggaacaaaac 294
||||||| |||||||||||
Sbjct: 352 gaatgtgctggaacaaaac 370
>PTA.sd.16998.C1 nseq=45
Length = 7019
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 atgcaaaagaaagag 229
|||||||||||||||
Sbjct: 2177 atgcaaaagaaagag 2191
>PTA.sd.16461.C1 nseq=2
Length = 1322
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 gaaagatgcaaaaga 224
|||||||||||||||
Sbjct: 1004 gaaagatgcaaaaga 1018
>PTA.sd.14139.C1 nseq=3
Length = 3054
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 aaaagaaagagaagt 233
|||||||||||||||
Sbjct: 2879 aaaagaaagagaagt 2893
>PTA.sd.13519.C1 nseq=16
Length = 5893
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 aactctccctttggg 157
|||||||||||||||
Sbjct: 3812 aactctccctttggg 3798
>PTA.sd.13172.C2 nseq=9
Length = 840
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 tttgttgcagatgtt 111
|||||||||||||||
Sbjct: 382 tttgttgcagatgtt 396
>PTA.sd.12830.C1 nseq=38
Length = 2280
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 accttgcaaagagac 189
|||||||||||||||
Sbjct: 2236 accttgcaaagagac 2222
>PTA.sd.12191.C1 nseq=6
Length = 1104
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 aagaaagagaagtca 235
|||||||||||||||
Sbjct: 458 aagaaagagaagtca 472
>PTA.sd.10196.C1 nseq=9
Length = 1007
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 210 gaaagatgcaaaagaaagagaag 232
|||||| ||| ||||||||||||
Sbjct: 728 gaaagaagcacaagaaagagaag 750
>At5g36020.F
Length = 2166
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 281 tgatggaacaaaacc 295
|||||||||||||||
Sbjct: 978 tgatggaacaaaacc 964
>At5g28680.F
Length = 2577
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 ttttgttgcagatgt 110
|||||||||||||||
Sbjct: 1455 ttttgttgcagatgt 1441
>At5g07490.F
Length = 438
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 aagaaagagaagtca 235
|||||||||||||||
Sbjct: 133 aagaaagagaagtca 147
>At4g16310.F
Length = 3798
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 gatggaacaaaacca 296
|||||||||||||||
Sbjct: 1109 gatggaacaaaacca 1095
>At3g50460.F
Length = 618
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 catattagtattatc 41
|||||||||||||||
Sbjct: 480 catattagtattatc 466
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)