BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05421
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01310.F 595 e-170
PTA.sd.9625.C1 nseq=3 34 0.56
PTA.sd.6416.C1 nseq=30 34 0.56
PTA.sd.18080.C1 nseq=12 34 0.56
PTA.sd.16206.C1 nseq=19 34 0.56
PTA.sd.11020.C1 nseq=10 34 0.56
At5g66630.F PTA.sd.18002.singlet 32 2.2
PTA.sd.8309.C1 nseq=9 32 2.2
PTA.sd.7928.C1 nseq=4 32 2.2
PTA.sd.5968.C1 nseq=3 32 2.2
PTA.sd.17969.C1 nseq=70 32 2.2
PTA.sd.13977.C1 nseq=35 32 2.2
PTA.sd.10500.C1 nseq=35 32 2.2
At5g66620.F 32 2.2
At4g08010.F 32 2.2
>At1g01310.F
Length = 885
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ggaaagccaagaagcgtgtctccgaccatcttcctcctagtcatcctcttggtgaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ggaaagccaagaagcgtgtctccgaccatcttcctcctagtcatcctcttggtgaccgcc 63
Query: 61 ggagagaagacggaggcgaagccatggtggaagaaagtcggagattccatcgggaatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggagagaagacggaggcgaagccatggtggaagaaagtcggagattccatcgggaatata 123
Query: 121 gccggaggaataagaaatgcggttgggaattataaaccagtggagatgggattgtcgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gccggaggaataagaaatgcggttgggaattataaaccagtggagatgggattgtcgtta 183
Query: 181 aaaggaggattttgtgtgagaaagcttctgtctttgaatacgaatgtgttcagtgaatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaaggaggattttgtgtgagaaagcttctgtctttgaatacgaatgtgttcagtgaatgg 243
Query: 241 tgtatagctcttaatgatccaagagctcctatgtacatgaagattgagaatataccaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgtatagctcttaatgatccaagagctcctatgtacatgaagattgagaatataccaagt 303
>PTA.sd.9625.C1 nseq=3
Length = 2995
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 39 agtcatcctcttggtga 55
|||||||||||||||||
Sbjct: 954 agtcatcctcttggtga 938
>PTA.sd.6416.C1 nseq=30
Length = 1624
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 ccggagagaagacggag 75
|||||||||||||||||
Sbjct: 207 ccggagagaagacggag 223
>PTA.sd.18080.C1 nseq=12
Length = 1643
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 201 aaagcttctgtctttga 217
|||||||||||||||||
Sbjct: 423 aaagcttctgtctttga 407
>PTA.sd.16206.C1 nseq=19
Length = 3032
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 102 agattccatcgggaata 118
|||||||||||||||||
Sbjct: 1737 agattccatcgggaata 1753
>PTA.sd.11020.C1 nseq=10
Length = 1399
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 172 ttgtcgttaaaaggagg 188
|||||||||||||||||
Sbjct: 1008 ttgtcgttaaaaggagg 1024
>At5g66630.F PTA.sd.18002.singlet
Length = 2142
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 275 acatgaagattgagaa 290
||||||||||||||||
Sbjct: 1502 acatgaagattgagaa 1517
>PTA.sd.8309.C1 nseq=9
Length = 1314
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 tataaaccagtggaga 166
||||||||||||||||
Sbjct: 1255 tataaaccagtggaga 1270
>PTA.sd.7928.C1 nseq=4
Length = 2034
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 198 gagaaagcttctgtct 213
||||||||||||||||
Sbjct: 896 gagaaagcttctgtct 911
>PTA.sd.5968.C1 nseq=3
Length = 1014
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 gccggaggaataagaa 136
||||||||||||||||
Sbjct: 479 gccggaggaataagaa 494
>PTA.sd.17969.C1 nseq=70
Length = 1420
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 30 cttcctcctagtcatcctct 49
|||||||| |||||||||||
Sbjct: 156 cttcctccaagtcatcctct 175
>PTA.sd.13977.C1 nseq=35
Length = 2364
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 196 gtgagaaagcttctgtcttt 215
|||||||||||||| |||||
Sbjct: 69 gtgagaaagcttctctcttt 50
>PTA.sd.10500.C1 nseq=35
Length = 2051
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 279 gaagattgagaatata 294
||||||||||||||||
Sbjct: 1504 gaagattgagaatata 1519
>At5g66620.F
Length = 1935
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 275 acatgaagattgagaa 290
||||||||||||||||
Sbjct: 1289 acatgaagattgagaa 1304
>At4g08010.F
Length = 813
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 ggcgaagccatggtgg 90
||||||||||||||||
Sbjct: 419 ggcgaagccatggtgg 434
>At2g11180.F
Length = 1674
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 151 tataaaccagtggaga 166
||||||||||||||||
Sbjct: 284 tataaaccagtggaga 269
>At1g28310.F
Length = 921
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 tggagatgggattgtc 176
||||||||||||||||
Sbjct: 689 tggagatgggattgtc 674
>PTA.sd.9408.C1 nseq=15
Length = 2634
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 tggtggaagaaagtc 99
|||||||||||||||
Sbjct: 1747 tggtggaagaaagtc 1733
>PTA.sd.9269.C1 nseq=6
Length = 1444
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 gaattataaaccagt 161
|||||||||||||||
Sbjct: 1293 gaattataaaccagt 1279
>PTA.sd.9130.C1 nseq=8
Length = 1424
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 aggaggattttgtgt 197
|||||||||||||||
Sbjct: 990 aggaggattttgtgt 1004
>PTA.sd.8064.C2 nseq=2
Length = 1302
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 79 aagccatggtggaagaaag 97
|||||| ||||||||||||
Sbjct: 652 aagccagggtggaagaaag 670
>PTA.sd.7484.C1 nseq=12
Length = 6933
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 ggaaagccaagaagc 15
|||||||||||||||
Sbjct: 2201 ggaaagccaagaagc 2215
>PTA.sd.7281.C1 nseq=19
Length = 2000
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 cgccggagagaagac 71
|||||||||||||||
Sbjct: 102 cgccggagagaagac 116
>PTA.sd.7152.C1 nseq=18
Length = 778
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 266 ctcctatgtacatgaagat 284
||||| |||||||||||||
Sbjct: 214 ctcctctgtacatgaagat 196
>PTA.sd.710.C1 nseq=6
Length = 1589
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 tggagatgggattgt 175
|||||||||||||||
Sbjct: 1222 tggagatgggattgt 1236
>PTA.sd.6816.C1 nseq=6
Length = 1782
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 280 aagattgagaatata 294
|||||||||||||||
Sbjct: 1427 aagattgagaatata 1441
>PTA.sd.5758.C1 nseq=4
Length = 1142
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gttaaaaggaggatt 191
|||||||||||||||
Sbjct: 1014 gttaaaaggaggatt 1000
>PTA.sd.5305.C1 nseq=6
Length = 2426
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 117 tatagccggaggaataaga 135
|||||||||||||| ||||
Sbjct: 1172 tatagccggaggaagaaga 1190
>PTA.sd.5122.C1 nseq=3
Length = 2452
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 agaagacggaggcga 79
|||||||||||||||
Sbjct: 331 agaagacggaggcga 345
>PTA.sd.4501.C1 nseq=3
Length = 859
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 accgccggagagaag 69
|||||||||||||||
Sbjct: 83 accgccggagagaag 69
>PTA.sd.4285.C1 nseq=17
Length = 667
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 201 aaagcttctgtctttgaat 219
||||||| |||||||||||
Sbjct: 533 aaagcttatgtctttgaat 551
>PTA.sd.426.C1 nseq=2
Length = 409
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 gccatggtggaagaa 95
|||||||||||||||
Sbjct: 315 gccatggtggaagaa 329
>PTA.sd.4098.C1 nseq=3
Length = 3543
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ggaaagccaagaagc 15
|||||||||||||||
Sbjct: 729 ggaaagccaagaagc 715
>PTA.sd.4097.C1 nseq=12
Length = 1294
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ggaaagccaagaagc 15
|||||||||||||||
Sbjct: 743 ggaaagccaagaagc 729
>PTA.sd.3934.C1 nseq=2
Length = 400
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 aggaggattttgtgt 197
|||||||||||||||
Sbjct: 315 aggaggattttgtgt 329
>PTA.sd.16782.C1 nseq=5
Length = 634
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 ccatcttcctcctag 40
|||||||||||||||
Sbjct: 285 ccatcttcctcctag 299
>PTA.sd.15191.C1 nseq=10
Length = 1313
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 tcttaatgatccaag 263
|||||||||||||||
Sbjct: 1280 tcttaatgatccaag 1266
>PTA.sd.14609.C1 nseq=5
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 60 cggagagaagacggaggcg 78
||||||||||| |||||||
Sbjct: 617 cggagagaagaaggaggcg 635
>PTA.sd.12691.C1 nseq=3
Length = 1750
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 198 gagaaagcttctgtctttg 216
|||||||||||||| ||||
Sbjct: 434 gagaaagcttctgtttttg 416
>PTA.sd.12459.C1 nseq=2
Length = 5588
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 gagagaagacggagg 76
|||||||||||||||
Sbjct: 35 gagagaagacggagg 21
>PTA.sd.12093.C1 nseq=7
Length = 841
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 266 ctcctatgtacatgaagat 284
||||| |||||||||||||
Sbjct: 360 ctcctctgtacatgaagat 342
>PTA.sd.10595.C1 nseq=11
Length = 1152
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 279 gaagattgagaatat 293
|||||||||||||||
Sbjct: 236 gaagattgagaatat 250
>At5g46100.F
Length = 1419
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 atgaagattgagaat 291
|||||||||||||||
Sbjct: 229 atgaagattgagaat 243
>At5g44510.F
Length = 3564
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 ttccatcgggaatat 119
|||||||||||||||
Sbjct: 2310 ttccatcgggaatat 2324
>At5g10250.F
Length = 1824
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 200 gaaagcttctgtctt 214
|||||||||||||||
Sbjct: 456 gaaagcttctgtctt 442
>At3g29660.F
Length = 417
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 atgaagattgagaat 291
|||||||||||||||
Sbjct: 283 atgaagattgagaat 297
>At3g13820.F
Length = 1248
Score = 30.2 bits (15), Expect = 8.7
Identities = 24/27 (88%)
Strand = Plus / Minus
Query: 27 catcttcctcctagtcatcctcttggt 53
|||||||||||| || ||||||||||
Sbjct: 664 catcttcctcctcttcgtcctcttggt 638
>At2g40755.F
Length = 1281
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 gtgtgagaaagcttc 208
|||||||||||||||
Sbjct: 885 gtgtgagaaagcttc 899
>At2g16130.F
Length = 1536
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 tctccgaccatcttc 33
|||||||||||||||
Sbjct: 919 tctccgaccatcttc 933
>At1g78500.F
Length = 2304
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 aggaggattttgtgt 197
|||||||||||||||
Sbjct: 1392 aggaggattttgtgt 1378
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)