BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05321
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14570.F 589 e-168
PTA.sd.13720.C1 nseq=4 38 0.035
PTA.sd.9713.C1 nseq=8 34 0.55
PTA.sd.7798.C1 nseq=2 34 0.55
At1g24640.F 34 0.55
At4g20315.F PTA.sd.12279.singlet 32 2.2
At1g64100.F PTA.sd.3441.singlet 32 2.2
PTA.sd.9089.C1 nseq=4 32 2.2
PTA.sd.2096.C1 nseq=8 32 2.2
PTA.sd.1642.C1 nseq=19 32 2.2
PTA.sd.15458.C1 nseq=9 32 2.2
PTA.sd.11769.C1 nseq=2 32 2.2
PTA.sd.10639.C1 nseq=2 32 2.2
At5g49420.F 32 2.2
At3g52530.F 32 2.2
>At3g14570.F
Length = 5922
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 agccatttcatcaaaggttttgagctcatgattcttctggtcgtctacgagttgttcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5050 agccatttcatcaaaggttttgagctcatgattcttctggtcgtctacgagttgttcaag 5109
Query: 61 catacatctcaaagcaacatggcttactcattcatcactttctcagtgtggttcatgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5110 catacatctcaaagcaacatggcttactcattcatcactttctcagtgtggttcatgtct 5169
Query: 121 tttacttggttatgcgccccgtttctcttcaacccttcaggctttacctgggaaataata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5170 tttacttggttatgcgccccgtttctcttcaacccttcaggctttacctgggaaataata 5229
Query: 181 gtcggtgactggagagactggaacaggtggatcaaagagcaaggtggaatagggattcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5230 gtcggtgactggagagactggaacaggtggatcaaagagcaaggtggaatagggattcag 5289
Query: 241 caagacaagagctggcaatcttggtggaacgacgagcaagcccatctacgtggctct 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5290 caagacaagagctggcaatcttggtggaacgacgagcaagcccatctacgtggctct 5346
>PTA.sd.13720.C1 nseq=4
Length = 2363
Score = 38.2 bits (19), Expect = 0.035
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 catttcatcaaaggttttg 22
|||||||||||||||||||
Sbjct: 769 catttcatcaaaggttttg 787
>PTA.sd.9713.C1 nseq=8
Length = 1914
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 242 aagacaagagctggcaa 258
|||||||||||||||||
Sbjct: 1221 aagacaagagctggcaa 1205
>PTA.sd.7798.C1 nseq=2
Length = 1812
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10 atcaaaggttttgagct 26
|||||||||||||||||
Sbjct: 1672 atcaaaggttttgagct 1688
>At1g24640.F
Length = 3813
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 151 aacccttcaggctttac 167
|||||||||||||||||
Sbjct: 1090 aacccttcaggctttac 1106
>At4g20315.F PTA.sd.12279.singlet
Length = 486
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 gtcttttacttggtta 132
||||||||||||||||
Sbjct: 343 gtcttttacttggtta 358
>At1g64100.F PTA.sd.3441.singlet
Length = 2421
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 ttggtggaacgacgag 276
||||||||||||||||
Sbjct: 2243 ttggtggaacgacgag 2258
>PTA.sd.9089.C1 nseq=4
Length = 2426
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 23 agctcatgattcttct 38
||||||||||||||||
Sbjct: 1824 agctcatgattcttct 1839
>PTA.sd.2096.C1 nseq=8
Length = 2346
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 61 catacatctcaaagca 76
||||||||||||||||
Sbjct: 1576 catacatctcaaagca 1561
>PTA.sd.1642.C1 nseq=19
Length = 3340
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 91 ttcatcactttctcag 106
||||||||||||||||
Sbjct: 651 ttcatcactttctcag 636
>PTA.sd.15458.C1 nseq=9
Length = 14284
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 ttcatcaaaggttttg 22
||||||||||||||||
Sbjct: 14154 ttcatcaaaggttttg 14169
>PTA.sd.11769.C1 nseq=2
Length = 3611
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 98 ctttctcagtgtggtt 113
||||||||||||||||
Sbjct: 970 ctttctcagtgtggtt 985
>PTA.sd.10639.C1 nseq=2
Length = 1318
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 ttcatcaaaggttttg 22
||||||||||||||||
Sbjct: 407 ttcatcaaaggttttg 422
>At5g49420.F
Length = 1107
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 261 ttggtggaacgacgag 276
||||||||||||||||
Sbjct: 327 ttggtggaacgacgag 342
>At3g52530.F
Length = 1056
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 62 atacatctcaaagcaa 77
||||||||||||||||
Sbjct: 920 atacatctcaaagcaa 905
>At2g40050.F
Length = 1830
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gaaataatagtcggtg 187
||||||||||||||||
Sbjct: 342 gaaataatagtcggtg 327
>At2g16870.F
Length = 3330
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 189 ctggagagactggaac 204
||||||||||||||||
Sbjct: 1942 ctggagagactggaac 1957
>PTA.sd.9880.C1 nseq=64
Length = 2009
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ttcatcactttctca 105
|||||||||||||||
Sbjct: 1352 ttcatcactttctca 1338
>PTA.sd.9209.C1 nseq=77
Length = 2011
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 agcaagacaagagct 253
|||||||||||||||
Sbjct: 655 agcaagacaagagct 669
>PTA.sd.8859.C1 nseq=9
Length = 1646
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 gttcatgtcttttac 125
|||||||||||||||
Sbjct: 1394 gttcatgtcttttac 1380
>PTA.sd.8783.C1 nseq=2
Length = 4292
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 ttcttctggtcgtct 46
|||||||||||||||
Sbjct: 2941 ttcttctggtcgtct 2927
>PTA.sd.8441.C1 nseq=6
Length = 2106
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 ccgtttctcttcaac 153
|||||||||||||||
Sbjct: 2035 ccgtttctcttcaac 2049
>PTA.sd.8288.C1 nseq=4
Length = 4382
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 ctggagagactggaa 203
|||||||||||||||
Sbjct: 2726 ctggagagactggaa 2740
>PTA.sd.7578.C1 nseq=26
Length = 860
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 catgattcttctggt 41
|||||||||||||||
Sbjct: 423 catgattcttctggt 409
>PTA.sd.6674.C1 nseq=14
Length = 1368
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 agagcaaggtggaat 230
|||||||||||||||
Sbjct: 222 agagcaaggtggaat 208
>PTA.sd.6125.C1 nseq=7
Length = 936
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 ggagagactggaaca 205
|||||||||||||||
Sbjct: 272 ggagagactggaaca 286
>PTA.sd.5273.C1 nseq=13
Length = 1837
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 184 ggtgactggagagac 198
|||||||||||||||
Sbjct: 1477 ggtgactggagagac 1491
>PTA.sd.3776.C1 nseq=7
Length = 3508
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 gagagactggaacag 206
|||||||||||||||
Sbjct: 2962 gagagactggaacag 2948
>PTA.sd.3630.C1 nseq=5
Length = 1304
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 79 atggcttactcattcatca 97
||||||||||| |||||||
Sbjct: 624 atggcttactccttcatca 642
>PTA.sd.288.C1 nseq=7
Length = 1213
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 19 tttgagctcatgattcttc 37
||||||||||| |||||||
Sbjct: 501 tttgagctcatcattcttc 483
>PTA.sd.2804.C1 nseq=6
Length = 3302
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 ctggagagactggaa 203
|||||||||||||||
Sbjct: 3037 ctggagagactggaa 3051
>PTA.sd.22.C1 nseq=3
Length = 1579
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 ggcaatcttggtgga 268
|||||||||||||||
Sbjct: 119 ggcaatcttggtgga 105
>PTA.sd.17813.C1 nseq=16
Length = 1408
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 tcttcaacccttcag 160
|||||||||||||||
Sbjct: 806 tcttcaacccttcag 820
>PTA.sd.17608.C1 nseq=4
Length = 1483
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 gtcttttacttggtt 131
|||||||||||||||
Sbjct: 1006 gtcttttacttggtt 992
>PTA.sd.17477.C1 nseq=23
Length = 798
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 caaaggttttgagct 26
|||||||||||||||
Sbjct: 84 caaaggttttgagct 98
>PTA.sd.15405.C1 nseq=8
Length = 3761
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 100 ttctcagtgtggttcatgt 118
|||||| ||||||||||||
Sbjct: 2244 ttctcactgtggttcatgt 2262
>PTA.sd.14080.C1 nseq=2
Length = 1088
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 221 aaggtggaatagggattca 239
|||||||||||||| ||||
Sbjct: 625 aaggtggaatagggtttca 607
>PTA.sd.13634.C1 nseq=21
Length = 952
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 185 gtgactggagagactggaa 203
||||||||||||| |||||
Sbjct: 264 gtgactggagagattggaa 246
>PTA.sd.13087.C1 nseq=12
Length = 2281
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 144 tctcttcaacccttcaggc 162
||||||||||| |||||||
Sbjct: 1306 tctcttcaaccgttcaggc 1324
>PTA.sd.13023.C1 nseq=6
Length = 1195
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 gagttgttcaagcat 63
|||||||||||||||
Sbjct: 399 gagttgttcaagcat 413
>PTA.sd.12480.C1 nseq=2
Length = 2081
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 catgtcttttacttg 128
|||||||||||||||
Sbjct: 2024 catgtcttttacttg 2038
>PTA.sd.11361.C1 nseq=4
Length = 2566
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 86 actcattcatcactttctc 104
|||| ||||||||||||||
Sbjct: 1001 actccttcatcactttctc 983
>PTA.sd.11092.C1 nseq=2
Length = 2231
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 tggatcaaagagcaa 222
|||||||||||||||
Sbjct: 1544 tggatcaaagagcaa 1530
>PTA.sd.1087.C1 nseq=12
Length = 827
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 tcttctggtcgtcta 47
|||||||||||||||
Sbjct: 346 tcttctggtcgtcta 332
>PTA.sd.10865.C1 nseq=5
Length = 629
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 20 ttgagctcatgattcttct 38
|||| ||||||||||||||
Sbjct: 234 ttgaactcatgattcttct 216
>PTA.sd.10468.C1 nseq=5
Length = 938
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 caaaggttttgagct 26
|||||||||||||||
Sbjct: 814 caaaggttttgagct 800
>At4g33170.F
Length = 2973
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 tcatgtcttttactt 127
|||||||||||||||
Sbjct: 2671 tcatgtcttttactt 2657
>At1g76870.F
Length = 1158
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 17 gttttgagctcatgattct 35
|||| ||||||||||||||
Sbjct: 586 gtttagagctcatgattct 568
>At1g76310.F
Length = 1257
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 actggaacaggtgga 211
|||||||||||||||
Sbjct: 185 actggaacaggtgga 171
>At1g59265.F
Length = 4401
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 gtgtggttcatgtct 120
|||||||||||||||
Sbjct: 4283 gtgtggttcatgtct 4297
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)