BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05299
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01420.F 591 e-168
PTA.sd.29.C1 nseq=6 236 8e-62
PTA.sd.11153.C1 nseq=22 109 1e-23
PTA.sd.1768.C1 nseq=26 32 2.2
PTA.sd.14022.C1 nseq=4 32 2.2
At5g35060.F 32 2.2
At4g36770.F 32 2.2
At5g60900.F PTA.sd.17541.singlet 30 8.7
PTA.sd.9771.C1 nseq=7 30 8.7
PTA.sd.8966.C1 nseq=4 30 8.7
PTA.sd.886.C1 nseq=6 30 8.7
PTA.sd.7811.C1 nseq=3 30 8.7
PTA.sd.7777.C1 nseq=7 30 8.7
PTA.sd.6944.C1 nseq=17 30 8.7
PTA.sd.5490.C1 nseq=12 30 8.7
>At1g01420.F
Length = 1446
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 cgggttcacacgatgctgacgtgaacgatgagtacaaatgtttaaattggctagacaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cgggttcacacgatgctgacgtgaacgatgagtacaaatgtttaaattggctagacaacc 793
Query: 61 aaccattcgggtcggttctatacgtatcctttggaagcggcggaacactcacgtttgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aaccattcgggtcggttctatacgtatcctttggaagcggcggaacactcacgtttgagc 853
Query: 121 agttcattgagctggctcttggcctagcggagagtggaaaacggtttctttgggtcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 agttcattgagctggctcttggcctagcggagagtggaaaacggtttctttgggtcatac 913
Query: 181 gaagtccgagtgggatagctagttcatcgtatttcaatccacaaagccgaaatgatccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 gaagtccgagtgggatagctagttcatcgtatttcaatccacaaagccgaaatgatccat 973
Query: 241 tttcgtttttaccacaaggcttcttagaccgaaccaaagaaaaaggtctagtggttgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tttcgtttttaccacaaggcttcttagaccgaaccaaagaaaaaggtctagtggttgg 1031
>PTA.sd.29.C1 nseq=6
Length = 1688
Score = 236 bits (119), Expect = 8e-62
Identities = 224/259 (86%)
Strand = Plus / Plus
Query: 38 atgtttaaattggctagacaaccaaccattcgggtcggttctatacgtatcctttggaag 97
|||||||| |||||||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 817 atgtttaagttggctagacaaccaaccattcggctcggttctatacatatcatttggaag 876
Query: 98 cggcggaacactcacgtttgagcagttcattgagctggctcttggcctagcggagagtgg 157
|||||||||||| || | ||||||||| | |||||| ||| |||| || |||||||| ||
Sbjct: 877 cggcggaacacttacatgtgagcagtttaatgagcttgctattggtcttgcggagagcgg 936
Query: 158 aaaacggtttctttgggtcatacgaagtccgagtgggatagctagttcatcgtatttcaa 217
|||||||||| ||||||||||||||||||| || | ||||| |||||| |||||||||||
Sbjct: 937 aaaacggtttatttgggtcatacgaagtccaagcgagatagttagttcgtcgtatttcaa 996
Query: 218 tccacaaagccgaaatgatccattttcgtttttaccacaaggcttcttagaccgaaccaa 277
|||||| ||| | || || ||||||||||||||| || |||||||||||||||||
Sbjct: 997 tccacacagcgagacagaccccttttcgtttttaccaattgggttcttagaccgaaccaa 1056
Query: 278 agaaaaaggtctagtggtt 296
||| |||||| | ||||||
Sbjct: 1057 agagaaaggtttggtggtt 1075
>PTA.sd.11153.C1 nseq=22
Length = 1859
Score = 109 bits (55), Expect = 1e-23
Identities = 178/219 (81%)
Strand = Plus / Plus
Query: 37 aatgtttaaattggctagacaaccaaccattcgggtcggttctatacgtatcctttggaa 96
|||||||||| ||| | || ||||| || |||| |||||| |||| || |||||||| |
Sbjct: 919 aatgtttaaagtggttggataaccagccgctcggttcggttttatatgtgtcctttggta 978
Query: 97 gcggcggaacactcacgtttgagcagttcattgagctggctcttggcctagcggagagtg 156
| ||||| || ||||| | ||||||| ||| |||||| |||||||| || || || ||||
Sbjct: 979 gtggcggtaccctcacatgtgagcagctcaatgagcttgctcttggtcttgcagatagtg 1038
Query: 157 gaaaacggtttctttgggtcatacgaagtccgagtgggatagctagttcatcgtatttca 216
|||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||
Sbjct: 1039 agcaacggtttctttgggtcatacgaagtcctagtgggatcgctaattcgtcgtattttg 1098
Query: 217 atccacaaagccgaaatgatccattttcgtttttaccac 255
|| |||| |||| || |||||||| | ||||||||||
Sbjct: 1099 attcacatagccaaacagatccattgacatttttaccac 1137
>PTA.sd.1768.C1 nseq=26
Length = 1552
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 ccacaaagccgaaatg 234
||||||||||||||||
Sbjct: 767 ccacaaagccgaaatg 752
>PTA.sd.14022.C1 nseq=4
Length = 1857
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 120 cagttcattgagctgg 135
||||||||||||||||
Sbjct: 1417 cagttcattgagctgg 1432
>At5g35060.F
Length = 849
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 269 ccgaaccaaagaaaaa 284
||||||||||||||||
Sbjct: 14 ccgaaccaaagaaaaa 29
>At4g36770.F
Length = 1374
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 265 tagaccgaaccaaaga 280
||||||||||||||||
Sbjct: 989 tagaccgaaccaaaga 1004
>At5g60900.F PTA.sd.17541.singlet
Length = 2247
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 gtttttaccacaagg 259
|||||||||||||||
Sbjct: 1575 gtttttaccacaagg 1589
>PTA.sd.9771.C1 nseq=7
Length = 2737
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 tgacgtgaacgatga 31
|||||||||||||||
Sbjct: 1110 tgacgtgaacgatga 1096
>PTA.sd.8966.C1 nseq=4
Length = 1770
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 aaccaaagaaaaagg 286
|||||||||||||||
Sbjct: 1520 aaccaaagaaaaagg 1534
>PTA.sd.886.C1 nseq=6
Length = 1266
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 cagttcattgagctg 134
|||||||||||||||
Sbjct: 257 cagttcattgagctg 271
>PTA.sd.7811.C1 nseq=3
Length = 2928
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 gaaccaaagaaaaag 285
|||||||||||||||
Sbjct: 1624 gaaccaaagaaaaag 1638
>PTA.sd.7777.C1 nseq=7
Length = 2422
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 276 aaagaaaaaggtcta 290
|||||||||||||||
Sbjct: 727 aaagaaaaaggtcta 741
>PTA.sd.6944.C1 nseq=17
Length = 2806
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 gatgctgacgtgaac 26
|||||||||||||||
Sbjct: 652 gatgctgacgtgaac 666
>PTA.sd.5490.C1 nseq=12
Length = 2896
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 235 atccattttcgtttttacc 253
||||| |||||||||||||
Sbjct: 2766 atccaatttcgtttttacc 2784
>PTA.sd.4411.C1 nseq=10
Length = 1009
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 ggatagctagttcat 207
|||||||||||||||
Sbjct: 802 ggatagctagttcat 816
>PTA.sd.2680.C1 nseq=14
Length = 2599
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 aaagaaaaaggtcta 290
|||||||||||||||
Sbjct: 2443 aaagaaaaaggtcta 2429
>PTA.sd.2465.C1 nseq=9
Length = 1052
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 ctggctcttggccta 146
|||||||||||||||
Sbjct: 812 ctggctcttggccta 826
>PTA.sd.17474.C1 nseq=4
Length = 1560
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 24 aacgatgagtacaaatgtt 42
||||||||||||| |||||
Sbjct: 648 aacgatgagtacacatgtt 666
>PTA.sd.16188.C1 nseq=5
Length = 899
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 caaagaaaaaggtct 289
|||||||||||||||
Sbjct: 569 caaagaaaaaggtct 583
>PTA.sd.1574.C1 nseq=5
Length = 1857
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 ggcttcttagaccga 272
|||||||||||||||
Sbjct: 96 ggcttcttagaccga 110
>PTA.sd.13554.C1 nseq=3
Length = 1357
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 tacaaatgtttaaat 47
|||||||||||||||
Sbjct: 1327 tacaaatgtttaaat 1313
>PTA.sd.12229.C1 nseq=8
Length = 4107
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 aagaaaaaggtctag 291
|||||||||||||||
Sbjct: 2379 aagaaaaaggtctag 2393
>PTA.sd.11912.C1 nseq=9
Length = 1400
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 gttcacacgatgctg 18
|||||||||||||||
Sbjct: 830 gttcacacgatgctg 844
>At5g43480.F
Length = 246
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 accacaaggcttctt 265
|||||||||||||||
Sbjct: 137 accacaaggcttctt 123
>At5g19970.F
Length = 1092
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 accacaaggcttctt 265
|||||||||||||||
Sbjct: 885 accacaaggcttctt 871
>At5g15300.F
Length = 1545
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 aaaacggtttctttg 172
|||||||||||||||
Sbjct: 181 aaaacggtttctttg 195
>At3g28240.F
Length = 543
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 accaaccattcgggt 72
|||||||||||||||
Sbjct: 64 accaaccattcgggt 50
>At1g51880.F
Length = 2619
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 ttgagctggctcttg 141
|||||||||||||||
Sbjct: 2429 ttgagctggctcttg 2443
>At1g21530.F
Length = 2331
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 258 ggcttcttagaccga 272
|||||||||||||||
Sbjct: 52 ggcttcttagaccga 66
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)