BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_05123
(297 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01530.F 589 e-168
At1g65360.F 176 6e-44
At5g60440.F 42 0.002
PTA.sd.17167.C1 nseq=12 36 0.14
PTA.sd.16633.C1 nseq=2 36 0.14
At4g04430.F 36 0.14
PTA.sd.9780.C1 nseq=7 34 0.55
PTA.sd.2551.C1 nseq=4 34 0.55
PTA.sd.17530.C1 nseq=8 34 0.55
At4g14970.F 34 0.55
At1g06490.F 34 0.55
At1g17230.F PTA.sd.1248.singlet 32 2.2
PTA.sd.9918.C1 nseq=2 32 2.2
PTA.sd.9726.C1 nseq=8 32 2.2
PTA.sd.9667.C1 nseq=6 32 2.2
>At1g01530.F
Length = 744
Score = 589 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 aatgtgatcttgaagctttgaagaaggaagttgatgaaaaagtcgctcaacttcatcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatgtgatcttgaagctttgaagaaggaagttgatgaaaaagtcgctcaacttcatcata 505
Query: 61 gaaacctaaacttctatgttggaagttctagcaatgttgctgctccagcagctgttagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaaacctaaacttctatgttggaagttctagcaatgttgctgctccagcagctgttagtg 565
Query: 121 gtggtaatatctccacaaaccatggtttctttgatcaaaacggaaactctacttctgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtggtaatatctccacaaaccatggtttctttgatcaaaacggaaactctacttctgctc 625
Query: 181 caacactgccgtttggatttaatgttatgaatcgcacaccagctgggtacaacagttacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caacactgccgtttggatttaatgttatgaatcgcacaccagctgggtacaacagttacc 685
Query: 241 aactccaaaaccaggaggttaaacaagtccatcctcagtattgggctcgttactatt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aactccaaaaccaggaggttaaacaagtccatcctcagtattgggctcgttactatt 742
>At1g65360.F
Length = 681
Score = 176 bits (89), Expect = 6e-44
Identities = 147/164 (89%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 62 aaacctaaacttctatgttggaagttctagcaatgttgctgctccagcagctgttagtgg 121
||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 510 aaacccaaacttctatgttggaagttctagcaatgctgctgctccagcaactgttagtgg 569
Query: 122 tggtaatatctccacaaaccatggtttctttgatcaaaacggaa--ac-tctacttctgc 178
||||||||||||||||||||| || ||||||||||||||||||| || ||| | || |
Sbjct: 570 tggtaatatctccacaaaccaggggttctttgatcaaaacggaatgacgactaatcctac 629
Query: 179 tccaacactgccgtttggatttaatgttatgaatcgcacaccag 222
|| |||||| | |||||||||| || ||||||||||||||||||
Sbjct: 630 tcaaacacttctgtttggatttgatattatgaatcgcacaccag 673
>At5g60440.F
Length = 900
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 aaacttctatgttggaagttctagcaatgttgctgct 104
|||||||||||| ||||||||||| ||| |||||||
Sbjct: 528 aaacttctatgtgggaagttctagtaataatgctgct 564
>PTA.sd.17167.C1 nseq=12
Length = 2004
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5 tgatcttgaagctttgaa 22
||||||||||||||||||
Sbjct: 1696 tgatcttgaagctttgaa 1713
>PTA.sd.16633.C1 nseq=2
Length = 3459
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 155 tcaaaacggaaactctac 172
||||||||||||||||||
Sbjct: 1317 tcaaaacggaaactctac 1334
>At4g04430.F
Length = 1053
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 112 ctgttagtggtggtaatatctc 133
||||||||||||| ||||||||
Sbjct: 68 ctgttagtggtgggaatatctc 89
>PTA.sd.9780.C1 nseq=7
Length = 781
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 145 gtttctttgatcaaaac 161
|||||||||||||||||
Sbjct: 649 gtttctttgatcaaaac 633
>PTA.sd.2551.C1 nseq=4
Length = 4312
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26 ggaagttgatgaaaaag 42
|||||||||||||||||
Sbjct: 3054 ggaagttgatgaaaaag 3070
>PTA.sd.17530.C1 nseq=8
Length = 2341
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20 gaagaaggaagttgatg 36
|||||||||||||||||
Sbjct: 390 gaagaaggaagttgatg 374
>At4g14970.F
Length = 3861
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14 agctttgaagaaggaag 30
|||||||||||||||||
Sbjct: 1751 agctttgaagaaggaag 1735
>At1g06490.F
Length = 5802
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 121 gtggtaatatctccaca 137
|||||||||||||||||
Sbjct: 2107 gtggtaatatctccaca 2091
>At1g17230.F PTA.sd.1248.singlet
Length = 3402
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 cacaaaccatggtttc 149
||||||||||||||||
Sbjct: 2114 cacaaaccatggtttc 2099
>PTA.sd.9918.C1 nseq=2
Length = 3112
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 17 tttgaagaaggaagtt 32
||||||||||||||||
Sbjct: 3041 tttgaagaaggaagtt 3026
>PTA.sd.9726.C1 nseq=8
Length = 1901
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 24 aaggaagttgatgaaa 39
||||||||||||||||
Sbjct: 1337 aaggaagttgatgaaa 1352
>PTA.sd.9667.C1 nseq=6
Length = 3298
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 29 agttgatgaaaaagtc 44
||||||||||||||||
Sbjct: 632 agttgatgaaaaagtc 647
>PTA.sd.8912.C1 nseq=2
Length = 2493
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 243 ctccaaaaccaggagg 258
||||||||||||||||
Sbjct: 826 ctccaaaaccaggagg 811
>PTA.sd.8242.C1 nseq=22
Length = 1651
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 tgaagaaggaagttga 34
||||||||||||||||
Sbjct: 624 tgaagaaggaagttga 639
>PTA.sd.4245.C1 nseq=3
Length = 2468
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 238 accaactccaaaacca 253
||||||||||||||||
Sbjct: 1012 accaactccaaaacca 997
>PTA.sd.3759.C1 nseq=8
Length = 3076
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 109 cagctgttagtggtgg 124
||||||||||||||||
Sbjct: 1515 cagctgttagtggtgg 1530
>PTA.sd.338.C1 nseq=15
Length = 1503
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 169 ctacttctgctccaac 184
||||||||||||||||
Sbjct: 1196 ctacttctgctccaac 1181
>PTA.sd.2297.C1 nseq=44
Length = 936
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 ggtttctttgatcaaa 159
||||||||||||||||
Sbjct: 30 ggtttctttgatcaaa 45
>PTA.sd.2296.C1 nseq=43
Length = 833
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 ggtttctttgatcaaa 159
||||||||||||||||
Sbjct: 25 ggtttctttgatcaaa 40
>PTA.sd.13240.C1 nseq=19
Length = 1924
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 7 atcttgaagctttgaa 22
||||||||||||||||
Sbjct: 1638 atcttgaagctttgaa 1623
>PTA.sd.1200.C1 nseq=10
Length = 1880
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 153 gatcaaaacggaaact 168
||||||||||||||||
Sbjct: 990 gatcaaaacggaaact 1005
>At5g59270.F
Length = 2007
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 239 ccaactccaaaaccag 254
||||||||||||||||
Sbjct: 643 ccaactccaaaaccag 658
>At3g13010.F
Length = 1719
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 12 gaagctttgaagaagg 27
||||||||||||||||
Sbjct: 445 gaagctttgaagaagg 460
>At1g19810.F
Length = 1779
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 tgatcttgaagctttg 20
||||||||||||||||
Sbjct: 1653 tgatcttgaagctttg 1668
>At3g63460.F PTA.sd.11051.singlet
Length = 3294
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 96 gttgctgctccagcagctg 114
|||| ||||||||||||||
Sbjct: 2788 gttgttgctccagcagctg 2806
>At2g31900.F PTA.sd.6178.singlet
Length = 4473
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 tgatcttgaagcttt 19
|||||||||||||||
Sbjct: 1132 tgatcttgaagcttt 1118
>At1g47830.F PTA.sd.2528.singlet
Length = 465
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 aatatctccacaaac 140
|||||||||||||||
Sbjct: 308 aatatctccacaaac 294
>At1g12640.F PTA.sd.908.singlet
Length = 1344
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 aaggaagttgatgaa 38
|||||||||||||||
Sbjct: 1164 aaggaagttgatgaa 1150
>PTA.sd.8957.C1 nseq=21
Length = 989
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 tgaagaaggaagttg 33
|||||||||||||||
Sbjct: 314 tgaagaaggaagttg 328
>PTA.sd.8267.C1 nseq=29
Length = 2156
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 gctttgaagaaggaa 29
|||||||||||||||
Sbjct: 210 gctttgaagaaggaa 224
>PTA.sd.8199.C1 nseq=32
Length = 2305
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 ggaaactctacttct 176
|||||||||||||||
Sbjct: 1785 ggaaactctacttct 1799
>PTA.sd.7103.C1 nseq=31
Length = 1217
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 19 tgaagaaggaagttgatga 37
|||||||||||| ||||||
Sbjct: 1020 tgaagaaggaagatgatga 1038
>PTA.sd.6795.C1 nseq=51
Length = 1535
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 tgaagctttgaagaa 25
|||||||||||||||
Sbjct: 149 tgaagctttgaagaa 135
>PTA.sd.6554.C1 nseq=7
Length = 1912
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 12 gaagctttgaagaaggaag 30
|||||| ||||||||||||
Sbjct: 301 gaagctctgaagaaggaag 319
>PTA.sd.6488.C1 nseq=3
Length = 2082
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 ttctatgttggaagt 86
|||||||||||||||
Sbjct: 1322 ttctatgttggaagt 1336
>PTA.sd.628.C1 nseq=8
Length = 1888
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 catggtttctttgat 155
|||||||||||||||
Sbjct: 914 catggtttctttgat 900
>PTA.sd.6101.C1 nseq=4
Length = 1282
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 aatgtgatcttgaag 15
|||||||||||||||
Sbjct: 762 aatgtgatcttgaag 748
>PTA.sd.5604.C1 nseq=12
Length = 2467
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 20 gaagaaggaagttgatgaa 38
||||||||||| |||||||
Sbjct: 151 gaagaaggaaggtgatgaa 169
>PTA.sd.4248.C1 nseq=14
Length = 751
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 ctttgaagaaggaag 30
|||||||||||||||
Sbjct: 417 ctttgaagaaggaag 431
>PTA.sd.4247.C1 nseq=11
Length = 894
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 ctttgaagaaggaag 30
|||||||||||||||
Sbjct: 592 ctttgaagaaggaag 606
>PTA.sd.3832.C1 nseq=4
Length = 1371
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 gaaggaagttgatga 37
|||||||||||||||
Sbjct: 327 gaaggaagttgatga 313
>PTA.sd.3651.C1 nseq=5
Length = 15577
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 taatatctccacaaa 139
|||||||||||||||
Sbjct: 3772 taatatctccacaaa 3758
>PTA.sd.3302.C1 nseq=6
Length = 1683
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 aaacctaaacttcta 76
|||||||||||||||
Sbjct: 1034 aaacctaaacttcta 1020
>PTA.sd.3272.C1 nseq=8
Length = 2633
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 tcttgaagctttgaa 22
|||||||||||||||
Sbjct: 431 tcttgaagctttgaa 417
>PTA.sd.3256.C1 nseq=6
Length = 2907
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 tcttgaagctttgaa 22
|||||||||||||||
Sbjct: 684 tcttgaagctttgaa 670
>PTA.sd.3255.C1 nseq=11
Length = 2908
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 8 tcttgaagctttgaa 22
|||||||||||||||
Sbjct: 668 tcttgaagctttgaa 654
>PTA.sd.3063.C1 nseq=120
Length = 2959
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 agaaggaagttgatg 36
|||||||||||||||
Sbjct: 1521 agaaggaagttgatg 1535
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 297
length of database: 39,126,732
effective HSP length: 16
effective length of query: 281
effective length of database: 38,700,540
effective search space: 10874851740
effective search space used: 10874851740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)