BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_04442
(296 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16280.F 587 e-167
PTA.sd.10276.C1 nseq=6 42 0.002
PTA.sd.12367.C1 nseq=3 36 0.14
At1g75260.F 36 0.14
PTA.sd.7233.C1 nseq=4 34 0.55
PTA.sd.9836.C1 nseq=6 32 2.2
PTA.sd.9263.C1 nseq=8 32 2.2
PTA.sd.17240.C1 nseq=12 32 2.2
PTA.sd.14158.C1 nseq=6 32 2.2
PTA.sd.10620.C1 nseq=5 32 2.2
At3g43530.F 32 2.2
At3g13965.F 32 2.2
At2g06120.F 32 2.2
At1g21170.F 32 2.2
At4g00590.F PTA.sd.11111.singlet 30 8.6
>At3g16280.F
Length = 711
Score = 587 bits (296), Expect = e-167
Identities = 296/296 (100%)
Strand = Plus / Plus
Query: 1 cttgcttctctcttccctcgtccggcgtcatcatcgccgcatgatatccagacagccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttgcttctctcttccctcgtccggcgtcatcatcgccgcatgatatccagacagccgcc 414
Query: 61 gcagaagccgccgccatggtggtcgaagaaaaactgttagagaaggatgaggctccggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gcagaagccgccgccatggtggtcgaagaaaaactgttagagaaggatgaggctccggag 474
Query: 121 gccccaccttcgtcggaatcttcttacgtggcggcggagtcagaggatgaggagaggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gccccaccttcgtcggaatcttcttacgtggcggcggagtcagaggatgaggagaggttg 534
Query: 181 gagaaaattgtggagctgcctaacattgaagaaggaagttatgacgagagtgtgacatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gagaaaattgtggagctgcctaacattgaagaaggaagttatgacgagagtgtgacatca 594
Query: 241 cgtgctgatctggcttattctgagccgttcgattgttgggtgtatcctccggttat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cgtgctgatctggcttattctgagccgttcgattgttgggtgtatcctccggttat 650
>PTA.sd.10276.C1 nseq=6
Length = 2673
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 agaggatgaggagaggttgga 182
|||||||||||||||||||||
Sbjct: 630 agaggatgaggagaggttgga 650
>PTA.sd.12367.C1 nseq=3
Length = 1693
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 88 gaaaaactgttagagaag 105
||||||||||||||||||
Sbjct: 494 gaaaaactgttagagaag 511
>At1g75260.F
Length = 1782
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 205 attgaagaaggaagttat 222
||||||||||||||||||
Sbjct: 1323 attgaagaaggaagttat 1340
>PTA.sd.7233.C1 nseq=4
Length = 1440
Score = 34.2 bits (17), Expect = 0.55
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 181 gagaaaattgtggagct 197
|||||||||||||||||
Sbjct: 1137 gagaaaattgtggagct 1153
>PTA.sd.9836.C1 nseq=6
Length = 1882
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 tggtcgaagaaaaact 95
||||||||||||||||
Sbjct: 1670 tggtcgaagaaaaact 1655
>PTA.sd.9263.C1 nseq=8
Length = 2392
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 115 ccggaggccccaccttcgtc 134
|||||||||||||| |||||
Sbjct: 2167 ccggaggccccaccgtcgtc 2186
>PTA.sd.17240.C1 nseq=12
Length = 1557
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 tggtcgaagaaaaact 95
||||||||||||||||
Sbjct: 668 tggtcgaagaaaaact 653
>PTA.sd.14158.C1 nseq=6
Length = 1166
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 tggtggtcgaagaaaa 92
||||||||||||||||
Sbjct: 218 tggtggtcgaagaaaa 203
>PTA.sd.10620.C1 nseq=5
Length = 1448
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 162 agaggatgaggagagg 177
||||||||||||||||
Sbjct: 131 agaggatgaggagagg 116
>At3g43530.F
Length = 1848
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 gagaggttggagaaaa 187
||||||||||||||||
Sbjct: 1385 gagaggttggagaaaa 1400
>At3g13965.F
Length = 630
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 153 ggcggagtcagaggatgagg 172
||||||||||||||| ||||
Sbjct: 221 ggcggagtcagaggaggagg 202
>At2g06120.F
Length = 1200
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 gagaggttggagaaaa 187
||||||||||||||||
Sbjct: 782 gagaggttggagaaaa 797
>At1g21170.F
Length = 1905
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 agagtgtgacatcacg 242
||||||||||||||||
Sbjct: 935 agagtgtgacatcacg 950
>At4g00590.F PTA.sd.11111.singlet
Length = 1293
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 cgccgcatgatatcc 49
|||||||||||||||
Sbjct: 75 cgccgcatgatatcc 61
>PTA.sd.9918.C1 nseq=2
Length = 3112
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 ttgaagaaggaagtt 220
|||||||||||||||
Sbjct: 3040 ttgaagaaggaagtt 3026
>PTA.sd.8612.C1 nseq=18
Length = 1207
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 tctgagccgttcgat 273
|||||||||||||||
Sbjct: 489 tctgagccgttcgat 503
>PTA.sd.8446.C1 nseq=7
Length = 2083
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 cgtcatcatcgccgc 40
|||||||||||||||
Sbjct: 1637 cgtcatcatcgccgc 1623
>PTA.sd.7519.C1 nseq=8
Length = 1073
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 147 cgtggcggcggagtcagag 165
|||||||||||| ||||||
Sbjct: 69 cgtggcggcggattcagag 51
>PTA.sd.7460.C1 nseq=5
Length = 1450
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gaggatgaggagagg 177
|||||||||||||||
Sbjct: 391 gaggatgaggagagg 405
>PTA.sd.6890.C1 nseq=3
Length = 719
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 gaagaaggaagttat 222
|||||||||||||||
Sbjct: 12 gaagaaggaagttat 26
>PTA.sd.6865.C1 nseq=2
Length = 1410
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gcggcggagtcagag 165
|||||||||||||||
Sbjct: 126 gcggcggagtcagag 140
>PTA.sd.6748.C1 nseq=20
Length = 1421
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 127 ccttcgtcggaatct 141
|||||||||||||||
Sbjct: 122 ccttcgtcggaatct 108
>PTA.sd.654.C1 nseq=8
Length = 1295
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 cagccgccgcagaag 67
|||||||||||||||
Sbjct: 1148 cagccgccgcagaag 1134
>PTA.sd.5772.C1 nseq=8
Length = 1808
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 agaggttggagaaaa 187
|||||||||||||||
Sbjct: 692 agaggttggagaaaa 678
>PTA.sd.4965.C1 nseq=7
Length = 692
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 cttgcttctctcttc 15
|||||||||||||||
Sbjct: 67 cttgcttctctcttc 81
>PTA.sd.4136.C1 nseq=6
Length = 2270
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cttctctcttccctc 19
|||||||||||||||
Sbjct: 64 cttctctcttccctc 78
>PTA.sd.4054.C1 nseq=12
Length = 1297
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 124 ccaccttcgtcggaatctt 142
||||||| |||||||||||
Sbjct: 1048 ccacctttgtcggaatctt 1030
>PTA.sd.4037.C1 nseq=3
Length = 8334
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 tcgaagaaaaactgttaga 101
||||| |||||||||||||
Sbjct: 1646 tcgaaaaaaaactgttaga 1664
>PTA.sd.3814.C1 nseq=2
Length = 1977
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 ggaatcttcttacgt 149
|||||||||||||||
Sbjct: 1059 ggaatcttcttacgt 1073
>PTA.sd.2799.C1 nseq=5
Length = 2604
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cttgcttctctcttc 15
|||||||||||||||
Sbjct: 1873 cttgcttctctcttc 1859
>PTA.sd.2426.C1 nseq=4
Length = 810
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 tcagaggatgaggag 174
|||||||||||||||
Sbjct: 578 tcagaggatgaggag 592
>PTA.sd.2221.C1 nseq=12
Length = 1214
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 102 gaaggatgaggctccggag 120
||||||| |||||||||||
Sbjct: 296 gaaggattaggctccggag 278
>PTA.sd.17534.C1 nseq=20
Length = 2354
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 gatgaggagaggttg 180
|||||||||||||||
Sbjct: 542 gatgaggagaggttg 556
>PTA.sd.16450.C1 nseq=8
Length = 2544
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cttctctcttccctc 19
|||||||||||||||
Sbjct: 93 cttctctcttccctc 107
>PTA.sd.15905.C1 nseq=15
Length = 2717
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 ttatgacgagagtgt 233
|||||||||||||||
Sbjct: 2645 ttatgacgagagtgt 2631
>PTA.sd.159.C1 nseq=4
Length = 5235
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 aaactgttagagaag 105
|||||||||||||||
Sbjct: 2725 aaactgttagagaag 2739
>PTA.sd.15836.C1 nseq=2
Length = 1923
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 tgttagagaaggatg 109
|||||||||||||||
Sbjct: 630 tgttagagaaggatg 644
>PTA.sd.15475.C1 nseq=7
Length = 1176
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 cttctctcttccctc 19
|||||||||||||||
Sbjct: 637 cttctctcttccctc 623
>PTA.sd.15208.C1 nseq=8
Length = 1162
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 gaagaaaaactgtta 99
|||||||||||||||
Sbjct: 186 gaagaaaaactgtta 172
>PTA.sd.15159.C1 nseq=20
Length = 1804
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gagaaggatgaggct 114
|||||||||||||||
Sbjct: 654 gagaaggatgaggct 668
>PTA.sd.14609.C1 nseq=5
Length = 1813
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 ggagaaaattgtgga 194
|||||||||||||||
Sbjct: 1178 ggagaaaattgtgga 1192
>PTA.sd.14097.C1 nseq=3
Length = 2910
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gaggatgaggagagg 177
|||||||||||||||
Sbjct: 1586 gaggatgaggagagg 1600
>PTA.sd.13530.C1 nseq=8
Length = 1130
Score = 30.2 bits (15), Expect = 8.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 80 tggtcgaagaaaaactgtt 98
||||||| |||||||||||
Sbjct: 744 tggtcgatgaaaaactgtt 726
>PTA.sd.12592.C1 nseq=18
Length = 2272
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 tctctcttccctcgt 21
|||||||||||||||
Sbjct: 181 tctctcttccctcgt 195
>PTA.sd.12032.C1 nseq=2
Length = 3219
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 agaagccgccgccat 77
|||||||||||||||
Sbjct: 15 agaagccgccgccat 1
>PTA.sd.11777.C1 nseq=8
Length = 2657
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 gagaaaattgtggag 195
|||||||||||||||
Sbjct: 1695 gagaaaattgtggag 1681
>PTA.sd.10527.C1 nseq=34
Length = 649
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 276 ttgggtgtatcctcc 290
|||||||||||||||
Sbjct: 403 ttgggtgtatcctcc 389
>PTA.sd.10419.C1 nseq=7
Length = 1242
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 ttgcttctctcttcc 16
|||||||||||||||
Sbjct: 19 ttgcttctctcttcc 5
>At5g63300.F
Length = 654
Score = 30.2 bits (15), Expect = 8.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 gcttctctcttccct 18
|||||||||||||||
Sbjct: 33 gcttctctcttccct 47
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 296
length of database: 39,126,732
effective HSP length: 16
effective length of query: 280
effective length of database: 38,700,540
effective search space: 10836151200
effective search space used: 10836151200
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)