BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_04263
(298 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06490.F 591 e-168
At3g59100.F 119 1e-26
PTA.sd.14728.C1 nseq=3 52 2e-06
At5g36870.F 50 9e-06
At2g13675.F 42 0.002
PTA.sd.354.C1 nseq=6 38 0.036
PTA.sd.2070.C1 nseq=12 34 0.56
PTA.sd.6693.C1 nseq=2 32 2.2
PTA.sd.6184.C1 nseq=4 32 2.2
PTA.sd.14228.C1 nseq=11 32 2.2
PTA.sd.14015.C1 nseq=47 32 2.2
PTA.sd.13363.C1 nseq=8 32 2.2
At5g11180.F 32 2.2
At3g62210.F 32 2.2
At1g80140.F 32 2.2
>At1g06490.F
Length = 5802
Score = 591 bits (298), Expect = e-168
Identities = 298/298 (100%)
Strand = Plus / Plus
Query: 1 aatgtggttcctggtgacttcttggttgtttgctccatttatattcaacccatctgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5019 aatgtggttcctggtgacttcttggttgtttgctccatttatattcaacccatctgggtt 5078
Query: 61 tgagtggcaaaagacggtggacgattggactgactggaaacgttggatgggaaaccgcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5079 tgagtggcaaaagacggtggacgattggactgactggaaacgttggatgggaaaccgcgg 5138
Query: 121 tggcataggaattgttcttgacaaaagttgggaatcatggtgggatatagagcaagaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5139 tggcataggaattgttcttgacaaaagttgggaatcatggtgggatatagagcaagaaca 5198
Query: 181 tctcaagcacacaaatttaagaggaagggttctagagatacttctcgctctgcgttttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5199 tctcaagcacacaaatttaagaggaagggttctagagatacttctcgctctgcgttttct 5258
Query: 241 cctttaccagtatggaattgtctaccacctcaacatcgctcgccgccacacaacattt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5259 cctttaccagtatggaattgtctaccacctcaacatcgctcgccgccacacaacattt 5316
>At3g59100.F
Length = 5427
Score = 119 bits (60), Expect = 1e-26
Identities = 141/168 (83%)
Strand = Plus / Plus
Query: 19 ttcttggttgtttgctccatttatattcaacccatctgggtttgagtggcaaaagacggt 78
||||||||||||||| |||||||||||||| || || |||||||||||||||||||| ||
Sbjct: 4662 ttcttggttgtttgcaccatttatattcaatccttcggggtttgagtggcaaaagacagt 4721
Query: 79 ggacgattggactgactggaaacgttggatgggaaaccgcggtggcataggaattgttct 138
|||||||||||||| |||||||| ||| | ||| | || ||||| ||||| || |
Sbjct: 4722 tgacgattggactgattggaaacgatggcttggagatcggggtggtataggcatcccggt 4781
Query: 139 tgacaaaagttgggaatcatggtgggatatagagcaagaacatctcaa 186
||| ||||| |||||||| |||||| | ||||||||||||| |||||
Sbjct: 4782 tgaaaaaagctgggaatcgtggtggaacgtagagcaagaacacctcaa 4829
>PTA.sd.14728.C1 nseq=3
Length = 6207
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 143 aaaagttgggaatcatggtgggatatagagcaagaacatctc 184
|||||||||||||| |||||||| ||||||||||||||||
Sbjct: 5511 aaaagttgggaatcgtggtgggaggaagagcaagaacatctc 5552
Score = 32.2 bits (16), Expect = 2.2
Identities = 46/56 (82%)
Strand = Plus / Plus
Query: 44 ttcaacccatctgggtttgagtggcaaaagacggtggacgattggactgactggaa 99
||||| || ||||| ||||| ||||| |||| || || ||||||||||| |||||
Sbjct: 5412 ttcaatccttctggttttgaatggcagaagattgttgatgattggactgattggaa 5467
>At5g36870.F
Length = 4989
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 29 tttgctccatttatattcaacccatctgggtttgagtggca 69
|||||||| || |||||||||||||||| |||||||||||
Sbjct: 4363 tttgctcctttcttattcaacccatctggttttgagtggca 4403
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 149 tgggaatcatggtggga 165
|||||||||||||||||
Sbjct: 4486 tgggaatcatggtggga 4502
>At2g13675.F
Length = 5820
Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 141 acaaaagttgggaatcatggtggga 165
||||||| |||||||||||||||||
Sbjct: 5177 acaaaagctgggaatcatggtggga 5201
Score = 34.2 bits (17), Expect = 0.56
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 243 tttaccagtatggaattgtctacca 267
||||||||||||| ||||| |||||
Sbjct: 5279 tttaccagtatggtattgtgtacca 5303
Score = 30.2 bits (15), Expect = 8.7
Identities = 30/35 (85%)
Strand = Plus / Plus
Query: 5 tggttcctggtgacttcttggttgtttgctccatt 39
|||||||||||| ||| |||||||| || |||||
Sbjct: 5041 tggttcctggtgggttcctggttgttcgccccatt 5075
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 ccatctgggtttgag 64
|||||||||||||||
Sbjct: 673 ccatctgggtttgag 687
>PTA.sd.354.C1 nseq=6
Length = 5770
Score = 38.2 bits (19), Expect = 0.036
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 44 ttcaacccatctgggtttgagtggcaaaaga 74
||||| || ||||| ||||||||||||||||
Sbjct: 4832 ttcaatccgtctggttttgagtggcaaaaga 4862
Score = 36.2 bits (18), Expect = 0.14
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 146 agttgggaatcatggtgggatatagagcaagaacatct 183
||||||||||| |||||||| | |||| |||||||||
Sbjct: 4935 agttgggaatcttggtgggagaaagagttagaacatct 4972
>PTA.sd.2070.C1 nseq=12
Length = 2238
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 237 ttctcctttaccagtat 253
|||||||||||||||||
Sbjct: 874 ttctcctttaccagtat 890
>PTA.sd.6693.C1 nseq=2
Length = 1839
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 gcaagaacatctcaag 187
||||||||||||||||
Sbjct: 72 gcaagaacatctcaag 87
>PTA.sd.6184.C1 nseq=4
Length = 4653
Score = 32.2 bits (16), Expect = 2.2
Identities = 46/56 (82%)
Strand = Plus / Plus
Query: 44 ttcaacccatctgggtttgagtggcaaaagacggtggacgattggactgactggaa 99
||||| || ||||| || ||||||||||||| || || |||||||| || |||||
Sbjct: 3787 ttcaatccctctggtttcgagtggcaaaagatcgtagatgattggacagattggaa 3842
>PTA.sd.14228.C1 nseq=11
Length = 2023
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 165 atatagagcaagaaca 180
||||||||||||||||
Sbjct: 1924 atatagagcaagaaca 1909
>PTA.sd.14015.C1 nseq=47
Length = 712
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 127 aggaattgttcttgacaaaa 146
||||||||||||||| ||||
Sbjct: 231 aggaattgttcttgagaaaa 250
>PTA.sd.13363.C1 nseq=8
Length = 1500
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 229 tctgcgttttctcctt 244
||||||||||||||||
Sbjct: 508 tctgcgttttctcctt 523
>At5g11180.F
Length = 2721
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 128 ggaattgttcttgaca 143
||||||||||||||||
Sbjct: 115 ggaattgttcttgaca 130
>At3g62210.F
Length = 840
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 atggtgggatatagag 172
||||||||||||||||
Sbjct: 78 atggtgggatatagag 93
>At1g80140.F
Length = 1011
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 153 aatcatggtgggatat 168
||||||||||||||||
Sbjct: 230 aatcatggtgggatat 245
>At3g56450.F PTA.sd.10535.singlet
Length = 1146
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 catcgctcgccgcca 288
|||||||||||||||
Sbjct: 228 catcgctcgccgcca 242
>At1g64070.F PTA.sd.3444.singlet
Length = 3405
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 aaatttaagaggaag 207
|||||||||||||||
Sbjct: 2205 aaatttaagaggaag 2191
>PTA.sd.9870.C1 nseq=2
Length = 4587
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 ctccatttatattca 47
|||||||||||||||
Sbjct: 3211 ctccatttatattca 3197
>PTA.sd.9408.C1 nseq=15
Length = 2634
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 tttgctccatttata 43
|||||||||||||||
Sbjct: 1895 tttgctccatttata 1909
>PTA.sd.8337.C1 nseq=3
Length = 3861
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 237 ttctcctttaccagt 251
|||||||||||||||
Sbjct: 477 ttctcctttaccagt 491
>PTA.sd.7952.C1 nseq=12
Length = 5996
Score = 30.2 bits (15), Expect = 8.7
Identities = 42/51 (82%)
Strand = Plus / Plus
Query: 19 ttcttggttgtttgctccatttatattcaacccatctgggtttgagtggca 69
||||||| |||||||||| | |||||||||| | || |||||||||||
Sbjct: 5050 ttcttggctgtttgctccgtacctattcaaccctgccggatttgagtggca 5100
>PTA.sd.7505.C1 nseq=18
Length = 2749
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 180 atctcaagcacacaaattt 198
||||||| |||||||||||
Sbjct: 2722 atctcaaacacacaaattt 2704
>PTA.sd.7220.C1 nseq=17
Length = 9228
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 acaaaagttgggaat 155
|||||||||||||||
Sbjct: 3571 acaaaagttgggaat 3557
>PTA.sd.6414.C1 nseq=6
Length = 2140
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 caaaagttgggaatc 156
|||||||||||||||
Sbjct: 2004 caaaagttgggaatc 2018
>PTA.sd.4908.C1 nseq=25
Length = 2614
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 119 ggtggcataggaattgttcttga 141
||||||||||| || ||||||||
Sbjct: 1369 ggtggcatagggatggttcttga 1391
>PTA.sd.4808.C1 nseq=5
Length = 1118
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 228 ctctgcgttttctcc 242
|||||||||||||||
Sbjct: 29 ctctgcgttttctcc 15
>PTA.sd.4060.C1 nseq=9
Length = 3869
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 gacttcttggttgtt 30
|||||||||||||||
Sbjct: 3216 gacttcttggttgtt 3202
>PTA.sd.3260.C1 nseq=6
Length = 2919
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 194 aatttaagaggaagg 208
|||||||||||||||
Sbjct: 2503 aatttaagaggaagg 2517
>PTA.sd.2840.C1 nseq=21
Length = 1402
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 atagagcaagaacat 181
|||||||||||||||
Sbjct: 751 atagagcaagaacat 765
>PTA.sd.181.C1 nseq=6
Length = 2578
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 gactgactggaaacg 102
|||||||||||||||
Sbjct: 1499 gactgactggaaacg 1485
>PTA.sd.17966.C1 nseq=14
Length = 1392
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 aatcatggtgggata 167
|||||||||||||||
Sbjct: 1097 aatcatggtgggata 1111
>PTA.sd.17688.C1 nseq=8
Length = 733
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 ttcttgacaaaagtt 149
|||||||||||||||
Sbjct: 720 ttcttgacaaaagtt 706
>PTA.sd.17562.C1 nseq=7
Length = 3101
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 tggtgggatatagag 172
|||||||||||||||
Sbjct: 46 tggtgggatatagag 60
>PTA.sd.16071.C1 nseq=11
Length = 2048
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 ttgagtggcaaaaga 74
|||||||||||||||
Sbjct: 1077 ttgagtggcaaaaga 1091
>PTA.sd.14680.C1 nseq=10
Length = 652
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 tgagtggcaaaagac 75
|||||||||||||||
Sbjct: 301 tgagtggcaaaagac 315
>PTA.sd.14421.C1 nseq=23
Length = 1651
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 tgggaatcatggtgg 163
|||||||||||||||
Sbjct: 1206 tgggaatcatggtgg 1192
>PTA.sd.13075.C1 nseq=28
Length = 1381
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 cggtggcataggaat 132
|||||||||||||||
Sbjct: 974 cggtggcataggaat 960
>PTA.sd.12858.C1 nseq=23
Length = 1524
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 265 ccacctcaacatcgc 279
|||||||||||||||
Sbjct: 1056 ccacctcaacatcgc 1070
>PTA.sd.11295.C1 nseq=6
Length = 2938
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 gattggactgactgg 97
|||||||||||||||
Sbjct: 1621 gattggactgactgg 1635
>At5g35960.F
Length = 1290
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 aagaggaagggttct 213
|||||||||||||||
Sbjct: 178 aagaggaagggttct 164
>At5g35890.F
Length = 864
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 agggttctagagata 220
|||||||||||||||
Sbjct: 281 agggttctagagata 267
>At5g04730.F
Length = 1782
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 aagaggaagggttct 213
|||||||||||||||
Sbjct: 441 aagaggaagggttct 427
>At4g08990.F
Length = 4539
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gacaaaagttgggaa 154
|||||||||||||||
Sbjct: 6 gacaaaagttgggaa 20
>At3g57970.F
Length = 960
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 tttaccagtatggaa 257
|||||||||||||||
Sbjct: 801 tttaccagtatggaa 815
>At3g42880.F
Length = 1902
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 ctcctttaccagtat 253
|||||||||||||||
Sbjct: 1696 ctcctttaccagtat 1682
>At3g23960.F
Length = 1209
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 ttgttcttgacaaaa 146
|||||||||||||||
Sbjct: 208 ttgttcttgacaaaa 222
>At3g01840.F
Length = 1965
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 ggtttgagtggcaaa 71
|||||||||||||||
Sbjct: 160 ggtttgagtggcaaa 146
>At2g04720.F
Length = 360
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 gcaagaacatctcaa 186
|||||||||||||||
Sbjct: 136 gcaagaacatctcaa 150
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 298
length of database: 39,126,732
effective HSP length: 16
effective length of query: 282
effective length of database: 38,700,540
effective search space: 10913552280
effective search space used: 10913552280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)