BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_03750
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01480.F PTA.sd.33.singlet 571 e-162
PTA.sd.10895.C1 nseq=2 36 0.14
PTA.sd.10964.C1 nseq=15 34 0.56
At3g19320.F 34 0.56
PTA.sd.27.C1 nseq=7 32 2.2
At4g34940.F 32 2.2
At3g19280.F 32 2.2
At3g49700.F PTA.sd.10009.singlet 30 8.7
PTA.sd.9694.C1 nseq=6 30 8.7
PTA.sd.9693.C1 nseq=10 30 8.7
PTA.sd.9683.C1 nseq=7 30 8.7
PTA.sd.9678.C1 nseq=2 30 8.7
PTA.sd.9467.C1 nseq=17 30 8.7
PTA.sd.9306.C1 nseq=2 30 8.7
PTA.sd.880.C1 nseq=13 30 8.7
>At1g01480.F PTA.sd.33.singlet
Length = 1491
Score = 571 bits (288), Expect = e-162
Identities = 298/300 (99%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 1 gaaggttggggataaggcataaagtttttaccacggggatcaagaaagcagatattgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 gaaggttggggataaggcataaagtttttaccacggggatcaagaaagcagatattgctt 1072
Query: 61 gtttgacaagcaacgctggtttatttgcgtggatggatttgagacatctactgagagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 gtttgacaagcaacgctggtttatttgcgtggatggatttgagacatctactgagagatc 1132
Query: 121 gtaactcgtttgaatctgagatcgagctttggcatataatcatcgatagagttaagctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 gtaactcgtttgaatctgagatcgagctttggcatataatcatcgatagagttaagctca 1192
Query: 181 atgtgtctcctgactcnttccttccgttgcacggaacctggatggtttaggatttgcttt 240
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 atgtgtctcctggctc-ttccttccgttgcacggaacctggatggtttaggatttgcttt 1251
Query: 241 gccaacatggacgatgatactctccatgtggcgcttggacggatccaagatttcgtgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 gccaacatggacgatgatactctccatgtggcgcttggacggatccaagatttcgtgtct 1311
>PTA.sd.10895.C1 nseq=2
Length = 1467
Score = 36.2 bits (18), Expect = 0.14
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 58 cttgtttgacaagcaacgctggtttatttgcgtggatggatttgag 103
|||| |||| ||||||||| |||||||| | | ||||||||||||
Sbjct: 1052 cttgcttgagaagcaacgcgggtttattcgttttgatggatttgag 1097
>PTA.sd.10964.C1 nseq=15
Length = 4002
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 94 tggatttgagacatcta 110
|||||||||||||||||
Sbjct: 2152 tggatttgagacatcta 2136
>At3g19320.F
Length = 1482
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 130 ttgaatctgagatcgag 146
|||||||||||||||||
Sbjct: 773 ttgaatctgagatcgag 757
>PTA.sd.27.C1 nseq=7
Length = 939
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 104 acatctactgagagat 119
||||||||||||||||
Sbjct: 391 acatctactgagagat 406
>At4g34940.F
Length = 1995
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 ttccgttgcacggaac 217
||||||||||||||||
Sbjct: 1596 ttccgttgcacggaac 1581
>At3g19280.F
Length = 1506
Score = 32.2 bits (16), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 186 tctcctgactcnttccttc 204
||||||||||| |||||||
Sbjct: 916 tctcctgactcattccttc 934
>At3g49700.F PTA.sd.10009.singlet
Length = 1413
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 aagcaacgctggttt 82
|||||||||||||||
Sbjct: 1059 aagcaacgctggttt 1073
>PTA.sd.9694.C1 nseq=6
Length = 3898
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2455 gtggatggatttgag 2469
>PTA.sd.9693.C1 nseq=10
Length = 4147
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2349 gtggatggatttgag 2363
>PTA.sd.9683.C1 nseq=7
Length = 4049
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2292 gtggatggatttgag 2306
>PTA.sd.9678.C1 nseq=2
Length = 3024
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2019 gtggatggatttgag 2033
>PTA.sd.9467.C1 nseq=17
Length = 1191
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 ttgcttgtttgacaa 69
|||||||||||||||
Sbjct: 445 ttgcttgtttgacaa 459
>PTA.sd.9306.C1 nseq=2
Length = 5946
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2001 gtggatggatttgag 2015
>PTA.sd.880.C1 nseq=13
Length = 1944
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 gtttgaatctgagat 142
|||||||||||||||
Sbjct: 30 gtttgaatctgagat 16
>PTA.sd.6841.C1 nseq=13
Length = 932
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 246 catggacgatgatac 260
|||||||||||||||
Sbjct: 195 catggacgatgatac 181
>PTA.sd.4232.C1 nseq=6
Length = 1990
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 159 atcatcgatagagtt 173
|||||||||||||||
Sbjct: 1693 atcatcgatagagtt 1707
>PTA.sd.3790.C1 nseq=4
Length = 1999
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 219 tggatggtttaggatttgc 237
||||||||||||| |||||
Sbjct: 747 tggatggtttagggtttgc 765
>PTA.sd.2939.C1 nseq=4
Length = 2018
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gtggatggatttgag 103
|||||||||||||||
Sbjct: 2003 gtggatggatttgag 2017
>PTA.sd.2821.C1 nseq=7
Length = 1500
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 aggatttgctttgcc 243
|||||||||||||||
Sbjct: 1307 aggatttgctttgcc 1321
>PTA.sd.2595.C1 nseq=8
Length = 4209
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 gaatctgagatcgag 146
|||||||||||||||
Sbjct: 1169 gaatctgagatcgag 1183
>PTA.sd.1896.C1 nseq=7
Length = 1420
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 gagttaagctcaatg 183
|||||||||||||||
Sbjct: 1172 gagttaagctcaatg 1158
>PTA.sd.17917.C1 nseq=3
Length = 2028
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 ttttaccacggggat 40
|||||||||||||||
Sbjct: 154 ttttaccacggggat 168
>PTA.sd.17849.C1 nseq=5
Length = 1813
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 aaagcagatattgct 59
|||||||||||||||
Sbjct: 977 aaagcagatattgct 991
>PTA.sd.16180.C1 nseq=6
Length = 740
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 tggatggatttgaga 104
|||||||||||||||
Sbjct: 46 tggatggatttgaga 32
>PTA.sd.15789.C1 nseq=31
Length = 1068
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gatcaagaaagcaga 52
|||||||||||||||
Sbjct: 693 gatcaagaaagcaga 707
>PTA.sd.15502.C1 nseq=6
Length = 3600
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 267 tgtggcgcttggacg 281
|||||||||||||||
Sbjct: 68 tgtggcgcttggacg 82
>PTA.sd.15239.C1 nseq=8
Length = 3344
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 114 agagatcgtaactcgtttg 132
||||| |||||||||||||
Sbjct: 238 agagaacgtaactcgtttg 256
>PTA.sd.14710.C1 nseq=15
Length = 1740
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 catataatcatcgat 167
|||||||||||||||
Sbjct: 320 catataatcatcgat 306
>PTA.sd.13660.C1 nseq=9
Length = 1995
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 221 gatggtttaggatttgctt 239
||||||||||| |||||||
Sbjct: 1336 gatggtttagggtttgctt 1354
>PTA.sd.13554.C1 nseq=3
Length = 1357
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 244 aacatggacgatgatactc 262
||||||| |||||||||||
Sbjct: 1108 aacatggccgatgatactc 1090
>PTA.sd.12724.C1 nseq=7
Length = 1345
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 220 ggatggtttaggatttgctttgc 242
|||||||||||| |||| |||||
Sbjct: 1247 ggatggtttagggtttgttttgc 1269
>PTA.sd.11583.C1 nseq=2
Length = 1372
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 46 aagcagatattgcttgttt 64
|||||||||||| ||||||
Sbjct: 757 aagcagatattggttgttt 739
>PTA.sd.11021.C1 nseq=5
Length = 1402
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 gggatcaagaaagca 50
|||||||||||||||
Sbjct: 710 gggatcaagaaagca 724
>PTA.sd.10617.C1 nseq=3
Length = 1258
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 ggatttgctttgcca 244
|||||||||||||||
Sbjct: 191 ggatttgctttgcca 177
>At3g53590.F
Length = 2352
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 aagctcaatgtgtct 188
|||||||||||||||
Sbjct: 1610 aagctcaatgtgtct 1596
>At1g12290.F
Length = 2655
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 ttgagacatctactg 113
|||||||||||||||
Sbjct: 1132 ttgagacatctactg 1118
>At1g08910.F
Length = 1803
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 ggaacctggatggtt 227
|||||||||||||||
Sbjct: 337 ggaacctggatggtt 351
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)