BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_03360
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.15865.C1 nseq=10 595 e-170
At5g21930.F PTA.sd.15364.singlet 36 0.14
PTA.sd.13524.C1 nseq=8 36 0.14
PTA.sd.2427.C1 nseq=2 34 0.56
PTA.sd.17094.C1 nseq=51 34 0.56
PTA.sd.16234.C1 nseq=13 34 0.56
PTA.sd.13336.C1 nseq=8 34 0.56
PTA.sd.6588.C1 nseq=13 32 2.2
PTA.sd.6194.C1 nseq=10 32 2.2
PTA.sd.5332.C1 nseq=2 32 2.2
PTA.sd.5259.C1 nseq=4 32 2.2
PTA.sd.2129.C1 nseq=12 32 2.2
PTA.sd.15918.C1 nseq=3 32 2.2
PTA.sd.14683.C1 nseq=6 32 2.2
PTA.sd.13402.C1 nseq=6 32 2.2
>PTA.sd.15865.C1 nseq=10
Length = 844
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 ctaatgaagctgttctgatgggtattgggaagaagtggaaggagatacttgatgtcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctaatgaagctgttctgatgggtattgggaagaagtggaaggagatacttgatgtcaccg 602
Query: 61 acaagataactttcaataaccatgatgattccagaagaagccggttcactgtctgaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 acaagataactttcaataaccatgatgattccagaagaagccggttcactgtctgaagaa 662
Query: 121 acgagtgtgaagccagaggaagatgcaatatggctttttttgtgatactgtttggtcggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acgagtgtgaagccagaggaagatgcaatatggctttttttgtgatactgtttggtcggt 722
Query: 181 ttactcaaatagctgagacatttagggacattcactttgaggtgtaaactctacaaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttactcaaatagctgagacatttagggacattcactttgaggtgtaaactctacaaagtt 782
Query: 241 ttctgtttcattaaaatgattttttgttataaattaagttgagttatataaatctctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttctgtttcattaaaatgattttttgttataaattaagttgagttatataaatctctttc 842
>At5g21930.F PTA.sd.15364.singlet
Length = 2571
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29 gaagaagtggaaggagat 46
||||||||||||||||||
Sbjct: 393 gaagaagtggaaggagat 410
>PTA.sd.13524.C1 nseq=8
Length = 4972
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 237 agttttctgtttcattaa 254
||||||||||||||||||
Sbjct: 4563 agttttctgtttcattaa 4546
>PTA.sd.2427.C1 nseq=2
Length = 2802
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 233 acaaagttttctgtttc 249
|||||||||||||||||
Sbjct: 196 acaaagttttctgtttc 212
>PTA.sd.17094.C1 nseq=51
Length = 1670
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 24 attgggaagaagtggaaggag 44
|||||||||||| ||||||||
Sbjct: 119 attgggaagaagaggaaggag 99
>PTA.sd.16234.C1 nseq=13
Length = 1364
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 29 gaagaagtggaaggaga 45
|||||||||||||||||
Sbjct: 947 gaagaagtggaaggaga 963
>PTA.sd.13336.C1 nseq=8
Length = 1291
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 83 tgatgattccagaagaa 99
|||||||||||||||||
Sbjct: 752 tgatgattccagaagaa 768
>PTA.sd.6588.C1 nseq=13
Length = 1598
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 gtgaagccagaggaag 142
||||||||||||||||
Sbjct: 557 gtgaagccagaggaag 572
>PTA.sd.6194.C1 nseq=10
Length = 1149
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 260 ttttttgttataaattaagt 279
|||||| |||||||||||||
Sbjct: 1141 tttttttttataaattaagt 1122
>PTA.sd.5332.C1 nseq=2
Length = 1332
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 131 agccagaggaagatgc 146
||||||||||||||||
Sbjct: 389 agccagaggaagatgc 404
>PTA.sd.5259.C1 nseq=4
Length = 2022
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 20 gggtattgggaagaag 35
||||||||||||||||
Sbjct: 1798 gggtattgggaagaag 1813
>PTA.sd.2129.C1 nseq=12
Length = 2878
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 104 gttcactgtctgaaga 119
||||||||||||||||
Sbjct: 429 gttcactgtctgaaga 414
>PTA.sd.15918.C1 nseq=3
Length = 1218
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 231 ctacaaagttttctgtttca 250
|||||||||||||| |||||
Sbjct: 95 ctacaaagttttctctttca 114
>PTA.sd.14683.C1 nseq=6
Length = 2524
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 ggtcggtttactcaaa 189
||||||||||||||||
Sbjct: 423 ggtcggtttactcaaa 438
>PTA.sd.13402.C1 nseq=6
Length = 1389
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 131 agccagaggaagatgc 146
||||||||||||||||
Sbjct: 237 agccagaggaagatgc 222
>PTA.sd.13189.C1 nseq=2
Length = 1615
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 29 gaagaagtggaaggag 44
||||||||||||||||
Sbjct: 123 gaagaagtggaaggag 108
>PTA.sd.12241.C1 nseq=3
Length = 1224
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 84 gatgattccagaagaa 99
||||||||||||||||
Sbjct: 276 gatgattccagaagaa 261
>PTA.sd.10236.C1 nseq=8
Length = 1153
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 187 aaatagctgagacatt 202
||||||||||||||||
Sbjct: 971 aaatagctgagacatt 986
>cox2.F
Length = 783
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 atgattccagaagaag 100
||||||||||||||||
Sbjct: 442 atgattccagaagaag 457
>At3g18090.F
Length = 3117
Score = 32.2 bits (16), Expect = 2.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 38 gaaggagatacttgatgtca 57
|||||||||||| |||||||
Sbjct: 87 gaaggagatactggatgtca 106
>PTA.sd.9811.C1 nseq=5
Length = 4174
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 aactctacaaagttt 241
|||||||||||||||
Sbjct: 1607 aactctacaaagttt 1621
>PTA.sd.9496.C1 nseq=5
Length = 628
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 ggacattcactttga 220
|||||||||||||||
Sbjct: 509 ggacattcactttga 523
>PTA.sd.9495.C1 nseq=11
Length = 1390
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 206 ggacattcactttga 220
|||||||||||||||
Sbjct: 508 ggacattcactttga 522
>PTA.sd.8728.C1 nseq=3
Length = 1081
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 tgtaaactctacaaa 237
|||||||||||||||
Sbjct: 769 tgtaaactctacaaa 755
>PTA.sd.8451.C1 nseq=145
Length = 1729
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggaagaagtggaagg 42
|||||||||||||||
Sbjct: 1242 ggaagaagtggaagg 1256
>PTA.sd.8418.C1 nseq=20
Length = 2104
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 32 gaagtggaaggagatactt 50
|||||||||||||| ||||
Sbjct: 688 gaagtggaaggagagactt 670
>PTA.sd.7625.C1 nseq=17
Length = 3962
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 agatgcaatatggct 155
|||||||||||||||
Sbjct: 1203 agatgcaatatggct 1217
>PTA.sd.6728.C1 nseq=4
Length = 1687
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 actgtctgaagaaac 122
|||||||||||||||
Sbjct: 566 actgtctgaagaaac 552
>PTA.sd.6245.C1 nseq=5
Length = 1695
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 aaactctacaaagtt 240
|||||||||||||||
Sbjct: 1225 aaactctacaaagtt 1211
>PTA.sd.621.C1 nseq=4
Length = 2270
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gaagaagtggaagga 43
|||||||||||||||
Sbjct: 1931 gaagaagtggaagga 1945
>PTA.sd.6144.C1 nseq=59
Length = 1256
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 ttgatgtcaccgaca 63
|||||||||||||||
Sbjct: 73 ttgatgtcaccgaca 59
>PTA.sd.6009.C1 nseq=5
Length = 856
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 atgattccagaagaa 99
|||||||||||||||
Sbjct: 588 atgattccagaagaa 602
>PTA.sd.5555.C1 nseq=19
Length = 1602
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 ttatataaatctctt 298
|||||||||||||||
Sbjct: 48 ttatataaatctctt 62
>PTA.sd.4285.C1 nseq=17
Length = 667
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 tctgaagaaacgagt 126
|||||||||||||||
Sbjct: 116 tctgaagaaacgagt 102
>PTA.sd.4064.C1 nseq=7
Length = 1601
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggaagaagtggaagg 42
|||||||||||||||
Sbjct: 1286 ggaagaagtggaagg 1300
>PTA.sd.3261.C1 nseq=8
Length = 1344
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 tgtctgaagaaacga 124
|||||||||||||||
Sbjct: 830 tgtctgaagaaacga 816
>PTA.sd.2941.C1 nseq=44
Length = 1783
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggaagaagtggaagg 42
|||||||||||||||
Sbjct: 1395 ggaagaagtggaagg 1409
>PTA.sd.2621.C1 nseq=4
Length = 792
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 aagctgttctgatgg 21
|||||||||||||||
Sbjct: 407 aagctgttctgatgg 393
>PTA.sd.2522.C1 nseq=2
Length = 619
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 147 aatatggctttttttgtga 165
|||||| ||||||||||||
Sbjct: 57 aatatgtctttttttgtga 39
>PTA.sd.2170.C1 nseq=10
Length = 680
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 23 tattgggaagaagtggaag 41
|||||||||||||| ||||
Sbjct: 342 tattgggaagaagttgaag 360
>PTA.sd.17819.C1 nseq=16
Length = 1886
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 tccagaagaagccgg 104
|||||||||||||||
Sbjct: 542 tccagaagaagccgg 528
>PTA.sd.17261.C1 nseq=5
Length = 2549
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 tgattccagaagaag 100
|||||||||||||||
Sbjct: 289 tgattccagaagaag 303
>PTA.sd.15751.C1 nseq=21
Length = 1672
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 aagaagccggttcac 109
|||||||||||||||
Sbjct: 889 aagaagccggttcac 903
>PTA.sd.15652.C1 nseq=42
Length = 1483
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 gagtgtgaagccaga 137
|||||||||||||||
Sbjct: 772 gagtgtgaagccaga 786
>PTA.sd.15584.C1 nseq=11
Length = 762
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 agccagaggaagatg 145
|||||||||||||||
Sbjct: 459 agccagaggaagatg 445
>PTA.sd.15583.C1 nseq=36
Length = 2040
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 agccagaggaagatg 145
|||||||||||||||
Sbjct: 358 agccagaggaagatg 344
>PTA.sd.15344.C1 nseq=2
Length = 420
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 aagatgcaatatggc 154
|||||||||||||||
Sbjct: 15 aagatgcaatatggc 29
>PTA.sd.15180.C1 nseq=16
Length = 1211
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 caaagttttctgttt 248
|||||||||||||||
Sbjct: 1062 caaagttttctgttt 1076
>PTA.sd.12440.C1 nseq=5
Length = 1299
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 gattccagaagaagc 101
|||||||||||||||
Sbjct: 934 gattccagaagaagc 948
>PTA.sd.10920.C1 nseq=24
Length = 1830
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 ggtattgggaagaag 35
|||||||||||||||
Sbjct: 189 ggtattgggaagaag 175
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)