BLASTN 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ARI3_02184
(300 letters)
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
26,637 sequences; 39,126,732 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
PTA.sd.13146.C1 nseq=37 595 e-170
At3g45550.F 36 0.14
PTA.sd.2475.C1 nseq=8 34 0.56
PTA.sd.17093.C1 nseq=10 34 0.56
PTA.sd.15098.C1 nseq=4 34 0.56
PTA.sd.14686.C1 nseq=15 34 0.56
PTA.sd.11359.C1 nseq=24 34 0.56
PTA.sd.14087.C1 nseq=8 32 2.2
PTA.sd.13464.C1 nseq=2 32 2.2
At5g45580.F 32 2.2
At2g22760.F 32 2.2
At2g05390.F 32 2.2
PTA.sd.9717.C1 nseq=7 30 8.7
PTA.sd.9186.C1 nseq=10 30 8.7
PTA.sd.8876.C1 nseq=12 30 8.7
>PTA.sd.13146.C1 nseq=37
Length = 1866
Score = 595 bits (300), Expect = e-170
Identities = 300/300 (100%)
Strand = Plus / Plus
Query: 1 gtaaggccaaaagggctcacactgacaagtgatattcattgttccacgctctcaaaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 gtaaggccaaaagggctcacactgacaagtgatattcattgttccacgctctcaaaatag 1524
Query: 61 tcgaggtcacgaggttaaaacgccattgttgttggactgttctaaagtcagctagctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 tcgaggtcacgaggttaaaacgccattgttgttggactgttctaaagtcagctagctcac 1584
Query: 121 cggacaggttgcttgttgaatgaagggaaagtctcgagttggtgtctgatgggtttttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 cggacaggttgcttgttgaatgaagggaaagtctcgagttggtgtctgatgggtttttag 1644
Query: 181 aggctcgttgtgcacaagtgttgacttctttcctttattattttgtattgttttggacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 aggctcgttgtgcacaagtgttgacttctttcctttattattttgtattgttttggacaa 1704
Query: 241 tttatttcagcatttttacacagaagattagacattactagagaaattctagcaaaagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 tttatttcagcatttttacacagaagattagacattactagagaaattctagcaaaagct 1764
>At3g45550.F
Length = 2556
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 236 gacaatttatttcagcat 253
||||||||||||||||||
Sbjct: 1741 gacaatttatttcagcat 1758
>PTA.sd.2475.C1 nseq=8
Length = 1037
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 138 gaatgaagggaaagtct 154
|||||||||||||||||
Sbjct: 502 gaatgaagggaaagtct 518
>PTA.sd.17093.C1 nseq=10
Length = 1621
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 138 gaatgaagggaaagtct 154
|||||||||||||||||
Sbjct: 912 gaatgaagggaaagtct 928
>PTA.sd.15098.C1 nseq=4
Length = 1518
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 223 ttgtattgttttggaca 239
|||||||||||||||||
Sbjct: 1499 ttgtattgttttggaca 1515
>PTA.sd.14686.C1 nseq=15
Length = 2151
Score = 34.2 bits (17), Expect = 0.56
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 134 tgttgaatgaagggaaa 150
|||||||||||||||||
Sbjct: 640 tgttgaatgaagggaaa 656
>PTA.sd.11359.C1 nseq=24
Length = 1950
Score = 34.2 bits (17), Expect = 0.56
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 216 tattattttgtattgttttgg 236
|||||||||||| ||||||||
Sbjct: 1831 tattattttgtaatgttttgg 1851
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 acgccattgttgttgg 95
||||||||||||||||
Sbjct: 74 acgccattgttgttgg 59
>PTA.sd.14087.C1 nseq=8
Length = 2012
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 219 tattttgtattgtttt 234
||||||||||||||||
Sbjct: 1045 tattttgtattgtttt 1060
>PTA.sd.13464.C1 nseq=2
Length = 1163
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 79 aacgccattgttgttg 94
||||||||||||||||
Sbjct: 96 aacgccattgttgttg 81
>At5g45580.F
Length = 927
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 271 gacattactagagaaa 286
||||||||||||||||
Sbjct: 576 gacattactagagaaa 591
>At2g22760.F
Length = 888
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 272 acattactagagaaat 287
||||||||||||||||
Sbjct: 248 acattactagagaaat 233
>At2g05390.F
Length = 3924
Score = 32.2 bits (16), Expect = 2.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 139 aatgaagggaaagtct 154
||||||||||||||||
Sbjct: 2746 aatgaagggaaagtct 2761
>PTA.sd.9717.C1 nseq=7
Length = 2549
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 cgccattgttgttgg 95
|||||||||||||||
Sbjct: 100 cgccattgttgttgg 86
>PTA.sd.9186.C1 nseq=10
Length = 1421
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 225 gtattgttttggacaattt 243
||||||||||||| |||||
Sbjct: 418 gtattgttttggagaattt 436
>PTA.sd.8876.C1 nseq=12
Length = 1578
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 132 cttgttgaatgaagggaaa 150
||||| |||||||||||||
Sbjct: 1292 cttgtagaatgaagggaaa 1310
>PTA.sd.8681.C1 nseq=20
Length = 1390
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 158 gttggtgtctgatgggttt 176
||||||||||||| |||||
Sbjct: 1068 gttggtgtctgattggttt 1086
>PTA.sd.7721.C1 nseq=25
Length = 1464
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 25 acaagtgatattcattgtt 43
|||| ||||||||||||||
Sbjct: 82 acaattgatattcattgtt 64
>PTA.sd.7163.C1 nseq=2
Length = 735
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 cttctttcctttatt 219
|||||||||||||||
Sbjct: 705 cttctttcctttatt 691
>PTA.sd.6520.C1 nseq=13
Length = 1742
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 259 cacagaagattagac 273
|||||||||||||||
Sbjct: 1047 cacagaagattagac 1033
>PTA.sd.6255.C1 nseq=10
Length = 1330
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 tttattattttgtat 228
|||||||||||||||
Sbjct: 1164 tttattattttgtat 1150
>PTA.sd.5834.C1 nseq=13
Length = 1292
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 gacattactagagaa 285
|||||||||||||||
Sbjct: 822 gacattactagagaa 836
>PTA.sd.5795.C1 nseq=3
Length = 2189
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 attttgtattgtttt 234
|||||||||||||||
Sbjct: 133 attttgtattgtttt 119
>PTA.sd.5688.C1 nseq=2
Length = 612
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 tgatattcattgttc 44
|||||||||||||||
Sbjct: 517 tgatattcattgttc 531
>PTA.sd.5650.C1 nseq=4
Length = 2431
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 acattactagagaaa 286
|||||||||||||||
Sbjct: 404 acattactagagaaa 390
>PTA.sd.5440.C1 nseq=5
Length = 858
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 acgccattgttgttg 94
|||||||||||||||
Sbjct: 96 acgccattgttgttg 82
>PTA.sd.528.C1 nseq=9
Length = 1555
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 tttattattttgtat 228
|||||||||||||||
Sbjct: 118 tttattattttgtat 132
>PTA.sd.5084.C1 nseq=7
Length = 1262
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 tcaccggacaggttg 131
|||||||||||||||
Sbjct: 763 tcaccggacaggttg 777
>PTA.sd.4727.C1 nseq=20
Length = 1791
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 gttgcttgttgaatg 142
|||||||||||||||
Sbjct: 1719 gttgcttgttgaatg 1705
>PTA.sd.3295.C1 nseq=17
Length = 1614
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 aacgccattgttgtt 93
|||||||||||||||
Sbjct: 72 aacgccattgttgtt 58
>PTA.sd.2570.C1 nseq=15
Length = 682
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 aacgccattgttgtt 93
|||||||||||||||
Sbjct: 103 aacgccattgttgtt 89
>PTA.sd.2487.C1 nseq=4
Length = 2151
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 gaatgaagggaaagt 152
|||||||||||||||
Sbjct: 2051 gaatgaagggaaagt 2065
>PTA.sd.231.C1 nseq=2
Length = 1446
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 ttgacttctttcctt 215
|||||||||||||||
Sbjct: 393 ttgacttctttcctt 379
>PTA.sd.17679.C1 nseq=3
Length = 2268
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 acgccattgttgttg 94
|||||||||||||||
Sbjct: 178 acgccattgttgttg 164
>PTA.sd.1724.C1 nseq=18
Length = 1834
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 tgaagggaaagtctc 155
|||||||||||||||
Sbjct: 997 tgaagggaaagtctc 1011
>PTA.sd.16639.C1 nseq=92
Length = 1392
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 gtgatattcattgtt 43
|||||||||||||||
Sbjct: 655 gtgatattcattgtt 669
>PTA.sd.16530.C1 nseq=4
Length = 1714
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 tgacttctttccttt 216
|||||||||||||||
Sbjct: 1405 tgacttctttccttt 1391
>PTA.sd.16326.C1 nseq=6
Length = 4825
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 206 ttctttcctttattatttt 224
||||||| |||||||||||
Sbjct: 4679 ttctttcatttattatttt 4697
>PTA.sd.15609.C1 nseq=5
Length = 1001
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 tccacgctctcaaaa 57
|||||||||||||||
Sbjct: 329 tccacgctctcaaaa 343
>PTA.sd.14497.C1 nseq=46
Length = 1540
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 tattttgtattgttt 233
|||||||||||||||
Sbjct: 1412 tattttgtattgttt 1426
>PTA.sd.14355.C1 nseq=2
Length = 1405
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 tttacacagaagatt 269
|||||||||||||||
Sbjct: 370 tttacacagaagatt 384
>PTA.sd.13127.C1 nseq=3
Length = 759
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 catttttacacagaa 265
|||||||||||||||
Sbjct: 640 catttttacacagaa 626
>PTA.sd.128.C1 nseq=3
Length = 3999
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 125 caggttgcttgttgaatga 143
|||||||||||||| ||||
Sbjct: 361 caggttgcttgttggatga 379
>PTA.sd.12299.C2 nseq=37
Length = 4236
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 ttttgtattgttttg 235
|||||||||||||||
Sbjct: 2139 ttttgtattgttttg 2153
>PTA.sd.11491.C1 nseq=56
Length = 980
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 acgccattgttgttg 94
|||||||||||||||
Sbjct: 64 acgccattgttgttg 50
>At4g38760.F
Length = 1686
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 tttatttcagcattt 255
|||||||||||||||
Sbjct: 910 tttatttcagcattt 924
>At4g24790.F
Length = 2448
Score = 30.2 bits (15), Expect = 8.7
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 232 tttggacaatttatttcagcatt 254
|||||||||||| | ||||||||
Sbjct: 1134 tttggacaatttctctcagcatt 1156
>At3g44730.F
Length = 3264
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 cagaagattagacat 275
|||||||||||||||
Sbjct: 1587 cagaagattagacat 1601
>At2g01800.F
Length = 915
Score = 30.2 bits (15), Expect = 8.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 22 ctgacaagtgatattcatt 40
||||||||||||| |||||
Sbjct: 205 ctgacaagtgataatcatt 187
>At1g35730.F
Length = 1695
Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 tctgatgggttttta 179
|||||||||||||||
Sbjct: 67 tctgatgggttttta 81
Database: bm_kusatsu/ando/Fullchip/DGC3/DB/DGCDB_040722
Posted date: Jul 22, 2004 10:20 PM
Number of letters in database: 39,126,732
Number of sequences in database: 26,637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 300
length of database: 39,126,732
effective HSP length: 16
effective length of query: 284
effective length of database: 38,700,540
effective search space: 10990953360
effective search space used: 10990953360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)