BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039561.f
(1352 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145565.2| similar to hypothetical protein FLJ90396 [... 57 9e-07
ref|NP_744060.1| ribonuclease E [Pseudomonas putida KT2440]... 55 2e-06
ref|NP_354858.1| AGR_C_3445p [Agrobacterium tumefaciens]|gi... 55 3e-06
ref|XP_131120.2| RIKEN cDNA 1110021E09 [Mus musculus] 54 6e-06
gb|AAH44189.1| Similar to matrin cyclophilin (matrin-cyp) [... 54 6e-06
>ref|XP_145565.2| similar to hypothetical protein FLJ90396 [Homo sapiens] [Mus
musculus]
Length = 851
Score = 56.6 bits (135), Expect = 9e-07
Identities = 63/225 (28%), Positives = 78/225 (34%), Gaps = 27/225 (12%)
Frame = +3
Query: 198 DARRSRPQRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQGETQRGPREQRAG 377
D +R P P G + R E PS D E+ P P +ETQ E GPR Q
Sbjct: 549 DTKREHPPGPHGQETQR--EHPSGPCAQDTKR---EHPPGPRAQETQREHPPGPRAQDTK 603
Query: 378 ATGDEGK*KRERTRGTTPQTHNTET---HP---------RKRDGAPRQRRQSRNSAAGRE 521
G +E R P HN ET HP RK PR + R G
Sbjct: 604 REHPPGPRDQETQREHLPGPHNQETQREHPPGLGTRETQRKHPPGPRDQETQREHPPGPR 663
Query: 522 PRRHSNESRPADTPRTXEEPGQRVEDRRTKQDQNER----KARATEKPTTGARPARTGXX 689
R E P PR E + R ++ Q E +AR T++ T P G
Sbjct: 664 ARETQREHPPG--PRGQETQREHPPGPRARETQREHPPGPRARETQREHT---PGPRGQD 718
Query: 690 RERQ------ATK*RNRHRQKGHAHERQRA-----SAGTDDNGNP 791
+R+ A + H A E QR S D G P
Sbjct: 719 TQREHPPGLHAQDTKREHPPGPRAQETQREHPPGFSCSRDSEGEP 763
Score = 41.6 bits (96), Expect = 0.028
Identities = 39/160 (24%), Positives = 54/160 (33%), Gaps = 7/160 (4%)
Frame = +3
Query: 222 RPSGTQPPRDTET---PSNTAKADAH--EDGSENTPLPTQRETQGETQRGPREQRAGATG 386
+P Q PR T T P H E E+ P +ETQ E GPR Q
Sbjct: 456 KPFYHQMPRSTHTVEKPHERTHCGCHAQETQREHPQGPRAQETQREHPSGPRAQETQREH 515
Query: 387 DEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQ--RRQSRNSAAGREPRRHSNESRPADT 560
G ++ R P H ET G Q +R+ G+E +R A
Sbjct: 516 PPGPRAQDTKREHPPGPHGQETQREHPPGTRAQDTKREHPPGPHGQETQREHPSGPCAQD 575
Query: 561 PRTXEEPGQRVEDRRTKQDQNERKARATEKPTTGARPART 680
+ PG R ++ + + R + G R T
Sbjct: 576 TKREHPPGPRAQETQREHPPGPRAQDTKREHPPGPRDQET 615
>ref|NP_744060.1| ribonuclease E [Pseudomonas putida
KT2440]|gi|24983416|gb|AAN67524.1|AE016381_1 ribonuclease
E [Pseudomonas putida KT2440]
Length = 1091
Score = 55.5 bits (132), Expect = 2e-06
Identities = 43/176 (24%), Positives = 64/176 (35%), Gaps = 12/176 (6%)
Frame = +3
Query: 213 RPQRPSGTQPPRDTETP-SNTAKADAHEDGSENTPLPTQRETQGETQRGPREQRAGATGD 389
+P+ + PR+ P A + E P + + R PRE R G G+
Sbjct: 620 KPREERAERAPREERAPREERAPREERAPREERAPREERAPREERAPRQPREDRRGNRGE 679
Query: 390 EGK*KRERTRGTTPQTHNTETHPR-----------KRDGAPRQRRQSRNSAAGREPRRHS 536
E + TP E PR + + APR+ R R A RE R
Sbjct: 680 ERVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAPREERAPREERAPR 739
Query: 537 NESRPADTPRTXEEPGQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQA 704
E P + EE R E+R ++++ R+ RA P +P E+ A
Sbjct: 740 EERAPREERAPREERAPR-EERAPREERAPREERAPRPPREERQPRAAEEATEQAA 794
Score = 48.9 bits (115), Expect = 2e-04
Identities = 45/188 (23%), Positives = 73/188 (37%), Gaps = 2/188 (1%)
Frame = +3
Query: 198 DARRSRPQRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQGETQRGPREQRAG 377
D + P P+ +P + +P N + + + R + + +R PRE+RA
Sbjct: 576 DEPAAAPVAPAAEKPAAE-RSPRNEERRNGRQQSRN-------RNGRRDEERKPREERAE 627
Query: 378 ATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNESRPAD 557
E + RE + E PR+ + APR+ R R A R+PR +R +
Sbjct: 628 RAPREERAPREE------RAPREERAPRE-ERAPREERAPREERAPRQPREDRRGNRGEE 680
Query: 558 TPRTXEEP--GQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQATK*RNRHRQ 731
R EP +R +Q + ER AR P P RE +A + R+
Sbjct: 681 RVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAPREERAPREERAPRE 740
Query: 732 KGHAHERQ 755
+ E +
Sbjct: 741 ERAPREER 748
Score = 43.9 bits (102), Expect = 0.006
Identities = 53/242 (21%), Positives = 86/242 (34%)
Frame = +3
Query: 3 ERATKKQKAHGAAARARIPYRSKRQGRRNKQRRALENDADXXXXXXXXXXXXXXXXXXXX 182
ER ++++A A R P R+ R ++ RA +
Sbjct: 618 ERKPREERAERAPREERAP----REERAPREERAPREERAPREERAPREERAPRQPREDR 673
Query: 183 XXXXXDARRSRPQRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQGETQRGPR 362
+ R + P PP + E + A E+ + + E +R PR
Sbjct: 674 RGNRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERAPREERAPREERAPR 733
Query: 363 EQRAGATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNE 542
E+RA E + RE + E PR+ + APR+ R A R PR
Sbjct: 734 EERAPR---EERAPREERAPREERAPREERAPRE-ERAPREER------APRPPREERQ- 782
Query: 543 SRPADTPRTXEEPGQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQATK*RNR 722
PR EE ++ + +Q E + ++ T G RP R + R++ + R R
Sbjct: 783 ------PRAAEEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNR-RER 835
Query: 723 HR 728
R
Sbjct: 836 QR 837
Score = 33.9 bits (76), Expect = 5.9
Identities = 27/110 (24%), Positives = 39/110 (34%)
Frame = +3
Query: 429 PQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNESRPADTPRTXEEPGQRVEDRRT 608
P + + +R+G R+QSRN R+ R E R PR P + R
Sbjct: 590 PAAERSPRNEERRNG----RQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREE 645
Query: 609 KQDQNERKARATEKPTTGARPARTGXXRERQATK*RNRHRQKGHAHERQR 758
+ + ER R P RE +A + R+ ER R
Sbjct: 646 RAPREERAPREERAP------------REERAPRQPREDRRGNRGEERVR 683
>ref|NP_354858.1| AGR_C_3445p [Agrobacterium
tumefaciens]|gi|17935767|ref|NP_532557.1| OmpA family
protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]|gi|25519314|pir||B97586 hypothetical
protein AGR_C_3445 [imported] - Agrobacterium
tumefaciens (strain C58, Cereon)|gi|25522409|pir||AC2807
OmpA family protein [imported] - Agrobacterium
tumefaciens (strain C58,
Dupont)|gi|15156995|gb|AAK87643.1| AGR_C_3445p
[Agrobacterium tumefaciens str. C58
(Cereon)]|gi|17740325|gb|AAL42873.1| OmpA family protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 754
Score = 54.7 bits (130), Expect = 3e-06
Identities = 50/181 (27%), Positives = 71/181 (38%), Gaps = 25/181 (13%)
Frame = +3
Query: 207 RSRPQRPS-GTQPPRDTETPSNTAKADAH-EDGSENTPLPTQRETQGETQRGPREQ---- 368
++ P+R +P R+ E A A+ E E P P QRE + E P EQ
Sbjct: 85 QAEPKREERAPEPQREPEPKREAAPAEPRPEPKREAPPEPQQREARPEPAPAPAEQPQER 144
Query: 369 -----RAGATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGR--EPR 527
RA EG+ + R R P+ E P++R P++ Q R PR
Sbjct: 145 PRKPERAQEPQGEGEQRPARQREAAPEAAPAEQQPQERPRKPQKAEQPAGEGEQRPERPR 204
Query: 528 RHSN-------ESRPADTPRTXEEPGQRVEDRRTKQDQ-----NERKARATEKPTTGARP 671
+ E +PA P E+P + E K+ Q E+KA EKP +P
Sbjct: 205 KEKEPAKEPAAEQQPAARPENAEQPAKPREPAPGKKPQVEEKAPEQKAEPAEKPVPEKKP 264
Query: 672 A 674
A
Sbjct: 265 A 265
>ref|XP_131120.2| RIKEN cDNA 1110021E09 [Mus musculus]
Length = 542
Score = 53.9 bits (128), Expect = 6e-06
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 3/194 (1%)
Frame = +3
Query: 198 DARRSRPQRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQG---ETQRGPREQ 368
+ RRSR R S + + S + + H S + L ++E Q E + +E+
Sbjct: 257 ERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKER 316
Query: 369 RAGATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNESR 548
R + D G R R+R + + RK D R R + + + GR R ++ R
Sbjct: 317 RRSRSIDRGL-DRRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKER 375
Query: 549 PADTPRTXEEPGQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQATK*RNRHR 728
+D R E +R +++R++ D E+K + ++ R ++++ K +R R
Sbjct: 376 GSDRERDRERSRERSKEQRSRGDGEEKKHKEDKED-------RRHRDDKKESKKKHSRSR 428
Query: 729 QKGHAHERQRASAG 770
+ H + +AG
Sbjct: 429 SRERKHRSRSRNAG 442
Score = 44.7 bits (104), Expect = 0.003
Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 26/268 (9%)
Frame = +3
Query: 30 HGAAARARIPYRS---KRQGRRNKQR-------------RALENDADXXXXXXXXXXXXX 161
H R+R P RS +R RR++ R R LE + +
Sbjct: 255 HVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREK 314
Query: 162 XXXXXXXXXXXXDARRSRP-QRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQ 338
D RRSR +R RD + + D + + +R+
Sbjct: 315 ERRRSRSIDRGLDRRRSRSRERHRSRSRSRDRKGD----RRDRDREREKENERGRRRDRD 370
Query: 339 GETQRGPREQRAGATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGR 518
+ +RG +R E K +R+RG + + E +R ++ + ++S +
Sbjct: 371 YDKERGSDRERDRERSRERS-KEQRSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRS 429
Query: 519 EPRRHSNESRPADTPRTXEEPGQRVEDR---RTKQDQNERKARATEKPTTGARPARTGXX 689
R+H + SR A G+R R ++ + +NE K +A ++ +G++ RTG
Sbjct: 430 RERKHRSRSRNA---------GKRSRSRSKDKSSRHKNESKEKANKRSRSGSQ-GRTGSV 479
Query: 690 RERQ------ATK*RNRHRQKGHAHERQ 755
+R+ K R R R + +H+R+
Sbjct: 480 EKRKREHSPSREKSRKRSRSQDRSHKRE 507
Score = 39.3 bits (90), Expect = 0.14
Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 2/198 (1%)
Frame = +1
Query: 1 QREQQRSRRRTAPQRAHAFHTGANVKDDETNKXXXXXXXXXXXXXXXXXXDAAGREPRAL 180
+R+++RSR R+ QR+ K+D +E R
Sbjct: 380 ERDRERSRERSKEQRSRGDGEEKKHKED--------------------------KEDRRH 413
Query: 181 QNESGRTRDEADPSAPAERNHRETRRHPAXXXXXXXXXXXXXXHHYPRRERPRAKPKGGR 360
+++ ++ + S ER HR R+ +R R R+K K R
Sbjct: 414 RDDKKESKKKHSRSRSRERKHRSRSRNAG------------------KRSRSRSKDKSSR 455
Query: 361 GSREPAPRATRVSRR--EREQGERHPKHTTQRPTRGSETEPRDSDDKAETAQRAASRDAT 534
E +A + SR + G + P+R + S D++ + S+D +
Sbjct: 456 HKNESKEKANKRSRSGSQGRTGSVEKRKREHSPSREKSRKRSRSQDRSHKREHNDSKDQS 515
Query: 535 ATSHDQQTRRGRXKSQDK 588
Q ++ G +SQ+K
Sbjct: 516 DRQDHQSSQSGEPESQEK 533
>gb|AAH44189.1| Similar to matrin cyclophilin (matrin-cyp) [Danio rerio]
Length = 687
Score = 53.9 bits (128), Expect = 6e-06
Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 1/263 (0%)
Frame = +3
Query: 3 ERATKKQKAHGAAARARIPYRSKRQGRRNKQRRALENDADXXXXXXXXXXXXXXXXXXXX 182
E+ K+ + ++ R R K + + ++ + DAD
Sbjct: 419 EKKVSKRDKSRSPSKGRDRKRDKHRSKSRERDARKKPDADAEKKKSRSRSKSKDKKREKE 478
Query: 183 XXXXXDARRSRP-QRPSGTQPPRDTETPSNTAKADAHEDGSENTPLPTQRETQGETQRGP 359
D +R R + + D E + +DG + +++ GE +R
Sbjct: 479 KSKKPDDKRGRSASKEKDRKEKNDKEVEQKDRSKERAKDGEKEKSKEVEKKKNGERERSR 538
Query: 360 REQRAGATGDEGK*KRERTRGTTPQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSN 539
+++ +R R+RG R + G R R + R ++ RE R+ S+
Sbjct: 539 SKEKGRDVS-----RRSRSRG------------RGQRGQSRDRGRDRRHSSSRE-RKTSH 580
Query: 540 ESRPADTPRTXEEPGQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQATK*RN 719
SR + R G+ EDRR D R+ R ++ +ER + K R+
Sbjct: 581 RSRSRERAR-----GRDAEDRRKSADNKSRETRGRDR-----------SSKERSSQKQRS 624
Query: 720 RHRQKGHAHERQRASAGTDDNGN 788
R R+ + ++ G+ D+ N
Sbjct: 625 REREDRQKRRKDKSDTGSSDSDN 647
Score = 42.4 bits (98), Expect = 0.017
Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 22/189 (11%)
Frame = +3
Query: 276 KADAHEDGSENTPLPTQRETQGETQRGPREQRAGATGDEGK*KRERTRGTTP-------- 431
K D E+ ++ T L + + +G+ Q R+ + ++ KR+++R +
Sbjct: 385 KGDMSEEKTKTTELSSVNKARGDKQDTARKN---SEQEKKVSKRDKSRSPSKGRDRKRDK 441
Query: 432 -QTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNESRPADTPR-------------T 569
++ + E RK+ A ++++SR+ + ++ +R +S+ D R
Sbjct: 442 HRSKSRERDARKKPDADAEKKKSRSRSKSKDKKREKEKSKKPDDKRGRSASKEKDRKEKN 501
Query: 570 XEEPGQRVEDRRTKQDQNERKARATEKPTTGARPARTGXXRERQATK*RNRHRQKGHAHE 749
+E Q+ + +D + K++ EK G R + R ++ R R +G
Sbjct: 502 DKEVEQKDRSKERAKDGEKEKSKEVEKKKNGERERSRSKEKGRDVSR---RSRSRGRGQR 558
Query: 750 RQRASAGTD 776
Q G D
Sbjct: 559 GQSRDRGRD 567
Score = 36.2 bits (82), Expect = 1.2
Identities = 37/171 (21%), Positives = 67/171 (38%), Gaps = 5/171 (2%)
Frame = +3
Query: 264 SNTAKADAHEDGSENTPLPTQRETQGETQRGPREQRAGATGDEGK*KRERTRGTT----- 428
S++ D+ D S ++ E++ E +R + ++ E K K++ +G+
Sbjct: 192 SSSESEDSSSDSSSDS-----EESEKEKKRRKKHKKEHKKKKESKHKKKEKKGSDEEEAE 246
Query: 429 PQTHNTETHPRKRDGAPRQRRQSRNSAAGREPRRHSNESRPADTPRTXEEPGQRVEDRRT 608
PQ +T P + P R R S + S E D+ R E P
Sbjct: 247 PQAVST-IRPEEVPPIPENRFLMRRSPEKPKEEEQSKEKDKVDSGR--ERP--------- 294
Query: 609 KQDQNERKARATEKPTTGARPARTGXXRERQATK*RNRHRQKGHAHERQRA 761
+D++ + R E+P +RP RT R + + R ++ R R+
Sbjct: 295 -RDRDRERERERERPMANSRPNRTRLVMTRSGRRIKGRGPRRYRTPSRSRS 344
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.306 0.121 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 126
effective length of database: 260,468,745
effective search space used: 84391873380
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)