BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039559.f
(1593 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_297916.1| hypothetical protein [Xylella fastidiosa 9... 46 0.001
pir||S54157 extensin-like protein - cowpea (fragment) 44 0.005
dbj|BAC05058.1| unnamed protein product [Homo sapiens] 43 0.012
ref|XP_242536.1| hypothetical protein XP_242536 [Rattus nor... 41 0.046
pir||I46884 T-cell receptor beta chain - rabbit (fragment)|... 40 0.078
>ref|NP_297916.1| hypothetical protein [Xylella fastidiosa
9a5c]|gi|11361512|pir||H82781 hypothetical protein
XF0626 [imported] - Xylella fastidiosa (strain
9a5c)|gi|9105500|gb|AAF83436.1|AE003908_4 hypothetical
protein [Xylella fastidiosa 9a5c]
Length = 203
Score = 46.2 bits (108), Expect = 0.001
Identities = 34/122 (27%), Positives = 52/122 (41%)
Frame = +2
Query: 179 LTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT 358
LTP S T SHL H HL + L H + + H T L H SHLT
Sbjct: 68 LTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLT 125
Query: 359 XPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYS 538
P ++H++ + + T H + + + + + HL+PH + HLTP++
Sbjct: 126 -PHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTLHLTPHTSHLTPHTSHLTPHTSHLTPHT 184
Query: 539 XH 544
H
Sbjct: 185 SH 186
Score = 45.8 bits (107), Expect = 0.002
Identities = 52/186 (27%), Positives = 69/186 (36%), Gaps = 5/186 (2%)
Frame = +2
Query: 2 VIQTRHVXXXPTTXEXXPXTXPTSSHT-----HVCVITLPDSTWTSV*SSAIYAXXXXXX 166
V T H+ P T P T + HT H +T S T S
Sbjct: 27 VTHTSHLI--PHTSYLIPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTP 84
Query: 167 XXXXLTPRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHX 346
LTP S T SHL H HL + L H + + H T L H
Sbjct: 85 HTSHLTPHTSHLT-PHTSHLTPHT-SHLTPHTSHLTPHTSHLTPHTSHLTPHTSHLTPHT 142
Query: 347 SHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHL 526
SHLT P ++H++ + + T H T + T HT HL+PH + HL
Sbjct: 143 SHLT-PHTSHLTPHTLHLTPH-----TSHLTPHTSHLTPHT--SHLTPHTSHLTPHTSHL 194
Query: 527 TPYSXH 544
TP++ H
Sbjct: 195 TPHTSH 200
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 44.3 bits (103), Expect = 0.005
Identities = 50/223 (22%), Positives = 84/223 (37%)
Frame = +2
Query: 200 PTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHI 379
P FT HL H + HL + + H+ L+ T H L+ HL +S H
Sbjct: 73 PMFT-SLHLLHLLPHHLP---MCISPHHHHLLHRHLLMFTSHHLLHLLPHHLHMCISRHH 128
Query: 380 SHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCP 559
H T+ H H+ + + + T L H HHL HM +H
Sbjct: 129 HHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHL--HMCISH----------------- 169
Query: 560 TQHXHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYSIHTSTEHN*LILD 739
H H+ L + HL + + + ++L H+L+ + + + H+ +L
Sbjct: 170 -HHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSL----HLLHLLPHHLPMCISPHHHHLL- 223
Query: 740 IFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHXPHXICILNT 868
L + H H+L HH+ R + H H +++T
Sbjct: 224 -HHHLLMFTSHHLLHLLPHHLHM--CISRHHHHLLHHHLLMST 263
Score = 34.3 bits (77), Expect = 5.6
Identities = 47/215 (21%), Positives = 81/215 (36%), Gaps = 29/215 (13%)
Frame = +2
Query: 374 HISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHM----RYTHLSAXHLTPY 535
H+ H+ + + HRH+ + + ++ T L H HHL HM + HL HL +
Sbjct: 2 HLLHHHLHMCISHHRHHLLHHHLLMFTSHHLLHLLPHHL--HMCISRHHHHLLHHHLLMF 59
Query: 536 SXHYFSCPTQH-----XHINXLHXASTVLTHLYRTSTYTVALRSTLITYAHILYAITXYS 700
+ H+ H ++ LH L + + R L+ +H L + +
Sbjct: 60 TSHHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHLLHRHLLMFTSHHLLHLLPHH 119
Query: 701 IH-------------TSTEHN*LILDIFSLYLFYVQHIFTHILRHHIXFXSITLRIYXHX 841
+H TS H+ L+ + H H+L HH+ + I H
Sbjct: 120 LHMCISRHHHHLPMSTSPHHHHLLHHHLPM---STSHPLLHLLLHHLH-----MCISHHH 171
Query: 842 PHXICI-LNTXTIQESL----HXRQVVSYLHISHI 931
H + + L T T L H + + LH+ H+
Sbjct: 172 HHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHL 206
>dbj|BAC05058.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 43.1 bits (100), Expect = 0.012
Identities = 42/171 (24%), Positives = 64/171 (36%), Gaps = 14/171 (8%)
Frame = +2
Query: 329 TLYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSP---HMR 499
T + H H +TH H+ +T H T T I +Y+ +HT L+ H
Sbjct: 18 TYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTP 77
Query: 500 YTHLSAXHLTPYSXHYFSCPTQHX---HINXLHXASTVLTHLYRTSTYTVALRSTLITYA 670
TH H+T +S TQH H + H + H T ++ + I +
Sbjct: 78 LTHTPRTHITHHS------QTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHT 131
Query: 671 HI-LYAIT-------XYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILRHH 799
H L I+ Y+ HT +H + +L + H TH R H
Sbjct: 132 HAPLTEISPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTH 182
Score = 35.8 bits (81), Expect = 1.9
Identities = 28/108 (25%), Positives = 44/108 (39%), Gaps = 7/108 (6%)
Frame = +2
Query: 203 TFTLDSHLPHH-MFQH---LNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLT-XPL 367
T T +H+ HH QH ++ ++ H+T H T ++T H +H +
Sbjct: 79 THTPRTHITHHSQTQHTLLIHQSYTHTPTHHTQHKPHMHTPFTSINTPCIHHTHAPLTEI 138
Query: 368 STHISHNXQYT--TDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYT 505
S H YT T H+H + YT +HT+ H H +T
Sbjct: 139 SPHKPLKPTYTPHTHHKHTSHYSYTYHRHLSHTTHTHTHTPRTHKPHT 186
Score = 34.3 bits (77), Expect = 5.6
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 14/139 (10%)
Frame = +2
Query: 464 HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHINXL---HXASTVLTHL--YRTS 628
HT H + + H++ P+S + T H H + + H +T TH+ Y+
Sbjct: 2 HTIHTHTTHTIHTQHITYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYKAF 61
Query: 629 TYTVALRSTLITYAHILYAI-----TXYSIHTSTEHN*LILDIFSLYLFYVQHIFTHILR 793
T+T T +T H+ + T + H+ T+H LI ++ H TH +
Sbjct: 62 THTT---HTPLTSTHLHTPLTHTPRTHITHHSQTQHTLLIHQSYT-------HTPTHHTQ 111
Query: 794 H----HIXFXSITLRIYXH 838
H H F SI H
Sbjct: 112 HKPHMHTPFTSINTPCIHH 130
>ref|XP_242536.1| hypothetical protein XP_242536 [Rattus norvegicus]
Length = 465
Score = 41.2 bits (95), Expect = 0.046
Identities = 53/244 (21%), Positives = 85/244 (34%), Gaps = 6/244 (2%)
Frame = +2
Query: 8 QTRHVXXXPTTXEXXPXTXPT-SSHTHVCVITLPDSTWTSV*SSAIYAXXXXXXXXXXLT 184
+T H T T T S+ T + T P+ T+++ + Y+
Sbjct: 117 ETEHTYSTETEHTYSTETEHTYSTETELTYSTEPEHTYSTE-TEHTYSTETEHTYSTETE 175
Query: 185 PRXSXPTFTLDSHLPHHMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXP 364
S T H + + + +T S+ +L +T Y + T
Sbjct: 176 HTYSTET--------EHTYSTETEHTYSTETEHTYSTETELTYSTETELTYSTETEHTY- 226
Query: 365 LSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYXHHLSPHMRYTHLSAXHLTPYSXH 544
ST H T+H ++ T+ T + HTY + H T + T + H
Sbjct: 227 -STEPEHTYSTETEHTYSTETELTYSTEPE---HTYSTE-TEHTYSTETEHTYSTE-TEH 280
Query: 545 YFSCPTQHXHINXL-HXASTVLTHLYRTSTYTVALRSTLITYA----HILYAITXYSIHT 709
+S T+H + H ST H Y T T T +TY+ H T ++ T
Sbjct: 281 TYSTETEHTYSTETEHTYSTETEHTYSTETELTYSTETELTYSTETEHTYSTETEHTYST 340
Query: 710 STEH 721
TEH
Sbjct: 341 ETEH 344
Score = 40.8 bits (94), Expect = 0.059
Identities = 43/172 (25%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Frame = +2
Query: 233 HMFQHLNSNFVVLDNHYTDSSLHDLIRTTRLHTLYCHXSHLTXPLSTHISHNXQYTTDHR 412
H HL+S N +T S+ +L + + Y + T ST H T+H
Sbjct: 76 HGLPHLSSKL----NRHTYSTEPELTYSPQPELTYSTETEHTY--STETEHTYSTETEHT 129
Query: 413 HNAVTQYTIICTYQFLSHTYXHHL-SPHMRYTHLSAXHLTPYSX---HYFSCPTQHXHIN 580
++ T++T + T H S +T+ + T YS H +S T+H +
Sbjct: 130 YSTETEHTYSTETELTYSTEPEHTYSTETEHTYSTETEHT-YSTETEHTYSTETEHTYST 188
Query: 581 XL-HXASTVLTHLYRTSTYTVALRSTLITYA----HILYAITXYSIHTSTEH 721
H ST H Y T T T +TY+ H ++ T TEH
Sbjct: 189 ETEHTYSTETEHTYSTETELTYSTETELTYSTETEHTYSTEPEHTYSTETEH 240
Score = 38.1 bits (87), Expect = 0.39
Identities = 34/123 (27%), Positives = 47/123 (37%), Gaps = 8/123 (6%)
Frame = +2
Query: 326 HTLYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQFLSHTYX----HHLSPH 493
HT H ST H T+H ++ T++T + HTY H S
Sbjct: 256 HTYSTETEHT---YSTETEHTYSTETEHTYSTETEHTYSTETE---HTYSTETEHTYSTE 309
Query: 494 MRYTHLSAXHLTPYSX---HYFSCPTQHXHINXL-HXASTVLTHLYRTSTYTVALRSTLI 661
T+ + LT YS H +S T+H + H ST H Y T T T +
Sbjct: 310 TELTYSTETELT-YSTETEHTYSTETEHTYSTETEHTYSTETEHTYSTETEHTYSTETEL 368
Query: 662 TYA 670
TY+
Sbjct: 369 TYS 371
>pir||I46884 T-cell receptor beta chain - rabbit
(fragment)|gi|488328|gb|AAA82093.1| unknown protein
Length = 269
Score = 40.4 bits (93), Expect = 0.078
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Frame = +2
Query: 293 SLHDLIRTTRLHT-----LYCHXSHLTXPLSTHISHNXQYTTDHRHNAVTQYTIICTYQF 457
+L + RTT +HT Y H LT ++ + + H H +T +C Y
Sbjct: 15 TLTHITRTTHMHTRVHPHTYAHTHELTLTCASTYLNIRAHVHTHMHTCTHMHTQMCAYSH 74
Query: 458 LS---HTYXHHLSPHMRYTHLSAXHLTPYSXHYFSCPTQHXHIN 580
HT +P Y H A LT + H H H++
Sbjct: 75 TREYMHTLTQTCAPTHAYAHTYAHTLTHANSHVHLHGHMHTHVH 118
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 128
effective length of database: 257,790,653
effective search space used: 103631842506
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)