BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039551.f
(1462 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_149431.1| hypothetical protein XP_149431 [Mus musculus] 43 0.014
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 41 0.041
ref|XP_147855.1| RIKEN cDNA C030013D06 [Mus musculus]|gi|12... 36 1.3
pir||S54157 extensin-like protein - cowpea (fragment) 35 2.2
gb|AAL38250.1| unknown protein [Arabidopsis thaliana] 35 2.2
>ref|XP_149431.1| hypothetical protein XP_149431 [Mus musculus]
Length = 122
Score = 42.7 bits (99), Expect = 0.014
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 1185 THLQSPFYYNSSPLSHSHTHYHTHRI-YLSS*AHTSSHIRHTHIY---LTHS 1328
TH QS + ++ SH+HTH +TH + S HT +H HTH+Y +THS
Sbjct: 43 THTQSHAHAHTYTQSHTHTHLYTHSYSHTQSHTHTYTHHTHTHLYTHIVTHS 94
Score = 33.9 bits (76), Expect = 6.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Frame = +3
Query: 1185 THLQSPFYYNSSPLSHSHTHYHTH-------RIYLSS*AHTSSHI-----RHTHIYLTHS 1328
TH + Y ++ +H+HTH +TH Y + +H +H HTH+Y THS
Sbjct: 9 THTHTHSYTHTQSHTHTHTHSYTHTQSHTSTHCYTHTQSHAHAHTYTQSHTHTHLY-THS 67
Query: 1329 LS 1334
S
Sbjct: 68 YS 69
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 41.2 bits (95), Expect = 0.041
Identities = 34/119 (28%), Positives = 56/119 (46%), Gaps = 12/119 (10%)
Frame = +2
Query: 287 LSQFPPLTH*YIHKYTPTL---HILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYL 457
LS PLT +IH +T L H LS + Y T HI+ H H+ST ++ L + ++
Sbjct: 17 LSHTHPLTLTHIHSHTHPLTHSHPLS----HTYPLTLTHIHTHPHTHISTHTHPLTVTHI 72
Query: 458 TH---------HHFSDSRIHVSSPLFSTRHHIIDXYSPXYSTSDXSHCILNYSLSPTNS 607
TH H F+ + +H + + S H I +P ++ S I +++ T+S
Sbjct: 73 THTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTHIQTSTVTHTHS 131
Score = 37.7 bits (86), Expect = 0.45
Identities = 29/104 (27%), Positives = 42/104 (39%), Gaps = 3/104 (2%)
Frame = +3
Query: 1029 SHPTXXYHNTINDD*NIHPPIDXXXXXXXXXXXHTPYSRYVSHIFLTINLRQTHLQSPFY 1208
+HP H + + H HT + +T L T P +
Sbjct: 113 THPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPLTFTHTYPITHPLTHT----PTH 168
Query: 1209 YNSSPLSHSHTHYHTH-RIYLSS*AHTSSHIR-HTH-IYLTHSL 1331
++ L+HSHTH HTH + HTS+H HTH ++LT L
Sbjct: 169 THTHALTHSHTHIHTHMHSHTHPLTHTSTHTHPHTHNVWLTQDL 212
Score = 35.0 bits (79), Expect = 2.9
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Frame = +3
Query: 1149 VSHIFLTINLRQTHLQSPFYYNSSPLSHSHTHYHTH-RIYLSS*AH----TSSHIRHTHI 1313
V+HI T L TH+ S + ++ SH+H H HTH I+ ++ H TS+HI+ + +
Sbjct: 69 VTHITHTHLL--THIHSHSFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTHIQTSTV 126
Query: 1314 YLTHS 1328
THS
Sbjct: 127 THTHS 131
Score = 34.7 bits (78), Expect = 3.8
Identities = 26/62 (41%), Positives = 34/62 (53%), Gaps = 12/62 (19%)
Frame = +3
Query: 1176 LRQTHLQSPFY--YNSSPLSHS--------HTHYHTHRIYLSS*AH--TSSHIRHTHIYL 1319
L TH+ S + +S PLSH+ HTH HTH +S+ H T +HI HTH+ L
Sbjct: 23 LTLTHIHSHTHPLTHSHPLSHTYPLTLTHIHTHPHTH---ISTHTHPLTVTHITHTHL-L 78
Query: 1320 TH 1325
TH
Sbjct: 79 TH 80
Score = 34.3 bits (77), Expect = 5.0
Identities = 21/69 (30%), Positives = 32/69 (45%)
Frame = +3
Query: 1128 HTPYSRYVSHIFLTINLRQTHLQSPFYYNSSPLSHSHTHYHTHRIYLSS*AHTSSHIRHT 1307
HT S + +H ++ THL + + +S +H H+H H H +HT SHI
Sbjct: 57 HTHISTH-THPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIH-------SHTHSHIHSN 108
Query: 1308 HIYLTHSLS 1334
TH L+
Sbjct: 109 TPTHTHPLT 117
>ref|XP_147855.1| RIKEN cDNA C030013D06 [Mus musculus]|gi|12861848|dbj|BAB32292.1|
unnamed protein product [Mus musculus]
Length = 102
Score = 36.2 bits (82), Expect = 1.3
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 317 YIHKYTPT-LHILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYLTHHHFSDSRIHV 493
YI+ YT ++I I+IYIY HIYI TH H+ Y + Y H ++ + ++
Sbjct: 33 YIYIYTYIYIYIYIHIYIYIYIYIHTHIYIHTHIHIYIYIYIQIYIYTHIHTYTHTHTNI 92
Score = 33.5 bits (75), Expect = 8.5
Identities = 18/63 (28%), Positives = 33/63 (51%)
Frame = +2
Query: 305 LTH*YIHKYTPTLHILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYLTHHHFSDSR 484
+ H YI+ Y ++I + I+IY+Y +IYI + H+ Y + Y+ H + +
Sbjct: 13 VVHIYIYVY---IYIHTYIYIYVYIYIYTYIYIYIYIHI----YIYIYIYIHTHIYIHTH 65
Query: 485 IHV 493
IH+
Sbjct: 66 IHI 68
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 35.4 bits (80), Expect = 2.2
Identities = 24/86 (27%), Positives = 43/86 (49%), Gaps = 3/86 (3%)
Frame = +2
Query: 338 TLHILSLIFIYIY*QTSHHIYILTHYHVSTCSYSLLLFYLTHH-HFSDSRIHVSSPLFST 514
+LH+L L+ ++ S H + L H H+ + LL L HH H SR H P+ ++
Sbjct: 77 SLHLLHLLPHHLPMCISPHHHHLLHRHLLMFTSHHLLHLLPHHLHMCISRHHHHLPMSTS 136
Query: 515 --RHHIIDXYSPXYSTSDXSHCILNY 586
HH++ + P ++ H +L++
Sbjct: 137 PHHHHLLHHHLPMSTSHPLLHLLLHH 162
Score = 33.5 bits (75), Expect = 8.5
Identities = 32/130 (24%), Positives = 56/130 (42%), Gaps = 9/130 (6%)
Frame = +2
Query: 242 IHQLSHHSYISNIP*LSQFP----PLTH*YIHKYTP--TLH-ILSLIFIYIY*QTSHHIY 400
+H L HH ++ P P H +H + P T H +L L+ +++ SHH +
Sbjct: 113 LHLLPHHLHMCISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHMCISHHHH 172
Query: 401 ILTHYHVSTCSYSLLLFYLTHHHFSDSRIHVSSPLFSTRH--HIIDXYSPXYSTSDXSHC 574
L H + T + LL L HH P+F++ H H++ + P + H
Sbjct: 173 HLLHLRLPTFTSPHLLHLLPHH----------LPMFTSLHLLHLLPHHLPMCISPHHHHL 222
Query: 575 ILNYSLSPTN 604
+ ++ L T+
Sbjct: 223 LHHHLLMFTS 232
>gb|AAL38250.1| unknown protein [Arabidopsis thaliana]
Length = 398
Score = 35.4 bits (80), Expect = 2.2
Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 2/48 (4%)
Frame = +3
Query: 1155 HIFLTINLRQTHLQSPFYY--NSSPLSHSHTHYHTHRIYLSS*AHTSS 1292
H + +N Q H + PF+Y SS H H H+H H++ +S + +SS
Sbjct: 6 HYSIDLNEDQNHHEQPFFYPLGSSSSLHHHHHHHHHQVPSNSSSSSSS 53
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 93027561941
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)