BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039528.f
(1211 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S54157 extensin-like protein - cowpea (fragment) 49 2e-04
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 40 0.055
ref|XP_237351.1| similar to hypothetical protein MGC37640 [... 39 0.21
ref|XP_195731.1| similar to DYNEIN HEAVY CHAIN (DYHC) [Mus ... 39 0.21
ref|XP_231577.1| similar to LP07116p [Drosophila melanogast... 33 0.46
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 48.9 bits (115), Expect = 2e-04
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 39/240 (16%)
Frame = +3
Query: 423 QHITHIHNHHPIVFLSPISLRPKFYRLYFDNTLHLI---------SSSPLHYHLITINLQ 575
+H H+ +HH ++F S L + L +LHL+ SP H+HL+ +L
Sbjct: 46 RHHHHLLHHHLLMFTSHHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHLLHRHLL 105
Query: 576 Y--PYHYTPPQPSPIH--L*HHQHNDPTTRALTQ*F*SVHYIPYT------YLISYHLYT 725
+H P +H + H H+ P + + H++P + +L+ +HL+
Sbjct: 106 MFTSHHLLHLLPHHLHMCISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHM 165
Query: 726 ----NHYHFLYRH*PQTRTNTYPSVYHSSHHPLSIYT*NHILYNILSYT----------I 863
+H+H L+ P T T P + H H L ++T H+L+ + + +
Sbjct: 166 CISHHHHHLLHLRLP---TFTSPHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHL 222
Query: 864 IHHFSIDFTNNLYDCAIYCPHSYLVTTINQRQRHNTHH------SY*SIHNLHTSIPICT 1025
+HH + FT+ + PH +L I++ H HH S H LH +P+ T
Sbjct: 223 LHHHLLMFTS--HHLLHLLPH-HLHMCISRHHHHLLHHHLLMSTSPHHHHLLHHHLPMST 279
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 40.4 bits (93), Expect = 0.055
Identities = 51/187 (27%), Positives = 77/187 (40%), Gaps = 17/187 (9%)
Frame = +3
Query: 429 ITHIHNH-HPIVFLSPISLRPKFYRLYFDNTLHLISSS---PL------HYHLITINLQY 578
+THIH+H HP+ P+S + H S+ PL H HL+T +
Sbjct: 25 LTHIHSHTHPLTHSHPLSHTYPLTLTHIHTHPHTHISTHTHPLTVTHITHTHLLTHIHSH 84
Query: 579 PY-HYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIPYTYLISYHLYTNHYHFLYRH* 755
+ H + IH H H T T S H I + + H +T+ + Y H
Sbjct: 85 SFTHAHMHSHTHIHSHTHSHIHSNTPTHTHPLTSTH-IQTSTVTHTHSHTHAHKHTYTHT 143
Query: 756 -----PQTRTNTYPSVYHSSHHPLSIYT*NHILYNILSYTIIHHFSIDFTNNLYDCAIYC 920
P T T+TYP + +H P +T H L + S+T IH T+ L + +
Sbjct: 144 STHTHPLTFTHTYPITHPLTHTPTHTHT--HALTH--SHTHIHTHMHSHTHPLTHTSTHT 199
Query: 921 -PHSYLV 938
PH++ V
Sbjct: 200 HPHTHNV 206
Score = 33.5 bits (75), Expect = 6.7
Identities = 20/56 (35%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = +1
Query: 577 THTITH-HLNPHRYTYDITNTTTPLPEH*HNNSSQYTTSLIHISYHITYIPTITTS 741
THT TH H +TY IT+ T P H H ++ ++ + IH H P TS
Sbjct: 141 THTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTS 196
>ref|XP_237351.1| similar to hypothetical protein MGC37640 [Mus musculus] [Rattus
norvegicus]
Length = 883
Score = 38.5 bits (88), Expect = 0.21
Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 19/172 (11%)
Frame = +3
Query: 378 YKLXRPPPLRRIIYLQHITHIHNHHPIVFLSPISLRPKFYRLYFDNTLHLISSSP----- 542
+ L PP R Y H H+H P ++ TLH + ++P
Sbjct: 229 HHLHAAPPTRCTTYTLH--HLHAAPPTRCITC--------------TLHHVHAAPPTPCT 272
Query: 543 --LHYHL--------ITINLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIP 692
+ +HL IT L Y H PP P ++ HH H P T T +H +P
Sbjct: 273 TYMLHHLHAAPPTCCITYTL-YHLHPAPPTPCTTYMLHHLHAAPPTPCTTYMLHHLHAVP 331
Query: 693 YTYLISYHLYTNHYHFLYRH*PQTRTNTYPSVYHSSH----HPLSIYT*NHI 836
T +Y L+ H H P T TY + H H P + YT +H+
Sbjct: 332 PTPCTTYTLH--HLHAA----PPTPCTTY--MLHHLHAVPPTPCTTYTLHHL 375
Score = 38.1 bits (87), Expect = 0.27
Identities = 65/275 (23%), Positives = 99/275 (35%), Gaps = 36/275 (13%)
Frame = +3
Query: 378 YKLXRPPPLRRIIYLQHITH-----------IHNHHPIVFLSPISLRPKFYRLYFDNTLH 524
+ L PP R Y H H +H+ HP P Y + LH
Sbjct: 69 HHLHAAPPTRCTTYTLHHLHAASPARCTTYTLHHLHPAP--------PTCCTTYMLHHLH 120
Query: 525 LISSSP--------LHYHLITINLQYPYHYTPPQPSPI---HL*HHQHNDPTTRALTQ*F 671
S + LH T + Y H+ P P + +H H P TR T
Sbjct: 121 AASPTRCTTYTLHHLHPAPPTCCITYMLHHLHPAPPTCCITYTLYHLHPAPPTRCTTYML 180
Query: 672 *SVHYIPYTYLISYHLYTNHYHFLYRH*PQTRTNTYPSVYHSSHHPLS---IYT*NHI-- 836
+H P T I+Y LY H H P T TY +++H P + YT +H+
Sbjct: 181 HHLHPAPPTCCITYTLY--HLHAA----PPTCCITY-TLHHLHPAPPTCCITYTLHHLHA 233
Query: 837 --LYNILSYTIIHHFSIDFTNNLYDCAIYCPHSYLVTTINQRQRHNTHHS------Y*SI 992
+YT +HH C ++ H+ T H+ H + ++
Sbjct: 234 APPTRCTTYT-LHHLHAAPPTRCITCTLHHVHAAPPTPCTTYMLHHLHAAPPTCCITYTL 292
Query: 993 HNLHTSIPI-CT*HNIYIPNTVLTTAFTTH*ASHL 1094
++LH + P CT + ++ + T TT+ HL
Sbjct: 293 YHLHPAPPTPCTTYMLHHLHAAPPTPCTTYMLHHL 327
Score = 37.0 bits (84), Expect = 0.60
Identities = 39/145 (26%), Positives = 53/145 (35%), Gaps = 11/145 (7%)
Frame = +3
Query: 378 YKLXRPPPLRRIIYLQHITHIHNHHPIVFLSPISLRPKFYRLYFDNTLHLISSSPL---- 545
Y L PP Y+ H H+H P +P + Y + LH + +P
Sbjct: 293 YHLHPAPPTPCTTYMLH--HLHAAPP----TPCTT-------YMLHHLHAVPPTPCTTYT 339
Query: 546 --HYHLI-----TINLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIPYTYL 704
H H T + + H PP P + HH H P T T +H +P T
Sbjct: 340 LHHLHAAPPTPCTTYMLHHLHAVPPTPCTTYTLHHLHAAPPTPCTTYMLHHLHAVPPTPC 399
Query: 705 ISYHLYTNHYHFLYRH*PQTRTNTY 779
+Y L+ H H P TR TY
Sbjct: 400 TTYTLH--HLHAA----PPTRCITY 418
Score = 37.0 bits (84), Expect = 0.60
Identities = 41/158 (25%), Positives = 59/158 (36%), Gaps = 11/158 (6%)
Frame = +3
Query: 396 PPLRRIIYLQHITHIHNHHP-------IVFLSPISLRPKFYRLYFDNTLHLISSSPLHYH 554
PP Y+ H H+H P + L P P Y + LH +P +
Sbjct: 267 PPTPCTTYMLH--HLHAAPPTCCITYTLYHLHPAPPTP--CTTYMLHHLHAAPPTPCTTY 322
Query: 555 LITINLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIPYTYLISYHLYTNHY 734
++ + H PP P + HH H P T T +H +P T +Y L+ H
Sbjct: 323 ML-----HHLHAVPPTPCTTYTLHHLHAAPPTPCTTYMLHHLHAVPPTPCTTYTLH--HL 375
Query: 735 HFLYRH*PQTRTNTYPSVYHSSH----HPLSIYT*NHI 836
H P T TY + H H P + YT +H+
Sbjct: 376 HAA----PPTPCTTY--MLHHLHAVPPTPCTTYTLHHL 407
Score = 33.1 bits (74), Expect = 8.7
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Frame = +3
Query: 378 YKLXRPPPLRRIIYLQHITHIHNHHPIVFLSPISLR---PKFYRLYFDNTLHLISSSPLH 548
+ L PP Y+ H H P + L P Y + LH + +P
Sbjct: 309 HHLHAAPPTPCTTYMLHHLHAVPPTPCTTYTLHHLHAAPPTPCTTYMLHHLHAVPPTPCT 368
Query: 549 YHLITINLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIPYTYLISYHL 719
+ + + H PP P ++ HH H P T T +H P T I+Y L
Sbjct: 369 TYTL-----HHLHAAPPTPCTTYMLHHLHAVPPTPCTTYTLHHLHAAPPTRCITYML 420
>ref|XP_195731.1| similar to DYNEIN HEAVY CHAIN (DYHC) [Mus musculus]
Length = 391
Score = 38.5 bits (88), Expect = 0.21
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 15/243 (6%)
Frame = +3
Query: 396 PPLRRIIYLQHITHIHNHH----PIVFLSPISLRPKFYRLYFDNTLHLISSSPLHYHLIT 563
P + RI I +H+H P +PI ++LH + PLH H I
Sbjct: 8 PCMERITVYTPIHSLHSHTQSTLPYTVYTPI------------HSLHS-HTQPLHSH-IQ 53
Query: 564 INLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIPYTYLISYHLYTNHYHFL 743
L Y + +PIH H +L S +PYT S+ +YT L
Sbjct: 54 STLPYTVY------TPIHSLHSHTQSTLPYSLHSHTQST--LPYTVYNSHTVYTPIQSTL 105
Query: 744 YRH*PQTRTNTYPSVYHSSHH-----PLSIYT*NHILYNILSYTIIHHFSIDFTNNLYDC 908
P T Y V+ H P ++YT H L++ YT IH T +
Sbjct: 106 ----PYT---VYTPVHSLHSHTQSTLPYTVYTPIHSLHSHTVYTPIHTLH-SHTQSTLPY 157
Query: 909 AIYCPHSYLVTTINQRQRHNTHHSY*SIHNLHTSIPICT*HNIYIP------NTVLTTAF 1070
+Y P + ++ ++H Y IH+LH+ + +YIP TV T
Sbjct: 158 TVYTP----IHSLQFPYSLHSHTVYTPIHSLHSHTQSTLPYTVYIPIHSLHSRTVYTPIH 213
Query: 1071 TTH 1079
+ H
Sbjct: 214 SLH 216
>ref|XP_231577.1| similar to LP07116p [Drosophila melanogaster] [Rattus norvegicus]
Length = 419
Score = 33.1 bits (74), Expect = 8.7
Identities = 29/113 (25%), Positives = 48/113 (41%), Gaps = 5/113 (4%)
Frame = +3
Query: 741 LYRH*PQTRTNTYPSVYHSSHHPLSIYT*NH-----ILYNILSYTIIHHFSIDFTNNLYD 905
L+++ T +P+ +SHHP S+ T +H ++ S + HH + T + D
Sbjct: 16 LHQYPNSVNTTHHPNSVSTSHHPNSVSTSHHPNSVSTTHHPDSVSTSHHPNSVNTTHHPD 75
Query: 906 CAIYCPHSYLVTTINQRQRHNTHHSY*SIHNLHTSIPICT*HNIYIPNTVLTT 1064
H V T + +T H S+ H + T H+ PN+V TT
Sbjct: 76 SVSTSHHPNSVNTTHHPDSVSTSHHPNSVSTTHHPDSVSTSHH---PNSVNTT 125
Score = 32.0 bits (71), Expect(2) = 2.1
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +1
Query: 211 HHPPTIAILHN---TSISIIPNLINIAHKPTNTESHIIPHYVLSAHH 342
HHP +++ H+ S S PN +N H P + + P+ V + HH
Sbjct: 99 HHPNSVSTTHHPDSVSTSHHPNSVNTTHHPDSVSTSHHPNSVNTTHH 145
Score = 28.9 bits (63), Expect(2) = 0.46
Identities = 17/66 (25%), Positives = 30/66 (44%)
Frame = +1
Query: 211 HHPPTIAILHNTSISIIPNLINIAHKPTNTESHIIPHYVLSAHHXYY*YEIECNMTINYX 390
HHP +++ H+ PN ++ +H P + + P V ++HH ++N
Sbjct: 27 HHPNSVSTSHH------PNSVSTSHHPNSVSTTHHPDSVSTSHH---------PNSVNTT 71
Query: 391 AHPLSV 408
HP SV
Sbjct: 72 HHPDSV 77
Score = 27.3 bits (59), Expect(2) = 0.46
Identities = 28/110 (25%), Positives = 43/110 (38%), Gaps = 3/110 (2%)
Frame = +3
Query: 513 NTLHLISSSPLHYHLITINLQYPYHYTPPQPSPIHL*HHQHNDPTTRALTQ*F*SVHYIP 692
NT H S +H ++N T P + HH ++ TT S H P
Sbjct: 69 NTTHHPDSVSTSHHPNSVN-------TTHHPDSVSTSHHPNSVSTTHHPDSVSTSHH--P 119
Query: 693 YTYLISYH---LYTNHYHFLYRH*PQTRTNTYPSVYHSSHHPLSIYT*NH 833
+ ++H + T+H H T +P +SHHP S+ T +H
Sbjct: 120 NSVNTTHHPDSVSTSH------HPNSVNTTHHPDSVSTSHHPNSVSTKHH 163
Score = 21.9 bits (45), Expect(2) = 2.1
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +2
Query: 413 NISTTHYPYTQSSSH 457
+++TTH+P + S+SH
Sbjct: 139 SVNTTHHPDSVSTSH 153
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 125
effective length of database: 261,807,791
effective search space used: 72782565898
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)