BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039522.f
(1438 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_592924.1| hypothetical 65.9 kd protein. [Schizosacch... 39 0.20
gb|ZP_00005222.1| hypothetical protein [Rhodobacter sphaero... 38 0.44
gb|AAF61746.1|AF051673_1 fruitless [Drosophila mimica] 37 0.75
gb|AAF82296.1|AF274061_1 putative transcription factor FRUI... 37 0.75
emb|CAC83675.1| mucin 5 [Homo sapiens] 33 1.9
>ref|NP_592924.1| hypothetical 65.9 kd protein. [Schizosaccharomyces
pombe]|gi|1175406|sp|Q09729|YA4C_SCHPO Hypothetical
protein C31A2.12 in chromosome I|gi|2130423|pir||S58106
hypothetical 65.9 kd protein - fission yeast
(Schizosaccharomyces pombe)|gi|914890|emb|CAA90470.1|
hypothetical 65.9 kd protein. [Schizosaccharomyces pombe]
Length = 596
Score = 38.9 bits (89), Expect = 0.20
Identities = 25/95 (26%), Positives = 43/95 (44%), Gaps = 6/95 (6%)
Frame = -3
Query: 1202 TYATARYDRVYINMRYTLTPTTFDNTAYNVTRLPRSSASLPPTARTTSSSLRHILIPLRT 1023
+Y + YDR+Y + Y+ T + A PR S+ PT + + R ++ L
Sbjct: 346 SYQNSMYDRLYDGLSYSNLDTPLPSGATT----PRRRDSMEPTYASNEAHRRQLIAGLTE 401
Query: 1022 LIPQ------SPSTAGPATHPLASPPAYGV*GHPA 936
L Q SP+ P+ HP PP++ + +P+
Sbjct: 402 LALQQQPQGRSPNEHSPSNHPEDFPPSFSLGSNPS 436
>gb|ZP_00005222.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 588
Score = 37.7 bits (86), Expect = 0.44
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -3
Query: 395 RAERGWQGRGTR-GARAHRLERRAWGCERPHLLAGEXRALRECKEPR-----RLTXCRHT 234
RA+RG G G R GA R RA+GC R AG+ R C +PR R RH+
Sbjct: 96 RADRGAPGHGARSGAEGPRRGPRAFGCRRQPRCAGDGRGPHRC-DPRGAGGGRDPALRHS 154
Query: 233 TNDDRPTDHAYTTHDNCHAH 174
RP A+ H
Sbjct: 155 DLSRRPERRAFQVQGGDDRH 174
>gb|AAF61746.1|AF051673_1 fruitless [Drosophila mimica]
Length = 337
Score = 37.0 bits (84), Expect = 0.75
Identities = 37/153 (24%), Positives = 64/153 (41%)
Frame = -3
Query: 1376 HTRAXVSPPLAHAS*RWPRRRAHSPLRXTSHSHTAQIRPITTHRRGIHXDHTGSLTHETY 1197
+ RA + PP H P+ T +S+T + + + R I + + + +
Sbjct: 64 YRRAIIYPPPHHDEDMPPQDL------YTDNSYTCEYKCRERNMRAIRCNRQPHYSQQQH 117
Query: 1196 ATARYDRVYINMRYTLTPTTFDNTAYNVTRLPRSSASLPPTARTTSSSLRHILIPLRTLI 1017
+ + +++ + T T + ++ L + AS PT T SSS R L +
Sbjct: 118 DQSLHPQLHNHQMATAPQTALNLGRHSTETLCAAEASHSPTPTTASSSYREQQPHLSYAL 177
Query: 1016 PQSPSTAGPATHPLASPPAYGV*GHPARSPTFH 918
QSP+ + + H L +YG GH A SP H
Sbjct: 178 QQSPTQS--SIHQLELAHSYGHHGHHA-SPQHH 207
>gb|AAF82296.1|AF274061_1 putative transcription factor FRUITLESS [Drosophila mimica]
Length = 337
Score = 37.0 bits (84), Expect = 0.75
Identities = 37/153 (24%), Positives = 64/153 (41%)
Frame = -3
Query: 1376 HTRAXVSPPLAHAS*RWPRRRAHSPLRXTSHSHTAQIRPITTHRRGIHXDHTGSLTHETY 1197
+ RA + PP H P+ T +S+T + + + R I + + + +
Sbjct: 66 YRRAIIYPPPHHDEDMPPQDL------YTDNSYTCEYKCRERNMRAIRCNRQPHYSQQQH 119
Query: 1196 ATARYDRVYINMRYTLTPTTFDNTAYNVTRLPRSSASLPPTARTTSSSLRHILIPLRTLI 1017
+ + +++ + T T + ++ L + AS PT T SSS R L +
Sbjct: 120 DQSLHPQLHNHQMATAPQTALNLGRHSTETLCAAEASHSPTPTTASSSYREQQPHLSYAL 179
Query: 1016 PQSPSTAGPATHPLASPPAYGV*GHPARSPTFH 918
QSP+ + + H L +YG GH A SP H
Sbjct: 180 QQSPTQS--SIHQLELAHSYGHHGHHA-SPQHH 209
>emb|CAC83675.1| mucin 5 [Homo sapiens]
Length = 1349
Score = 33.5 bits (75), Expect = 8.3
Identities = 35/142 (24%), Positives = 52/142 (35%)
Frame = -3
Query: 1391 PHSAPHTRAXVSPPLAHAS*RWPRRRAHSPLRXTSHSHTAQIRPITTHRRGIHXDHTGSL 1212
P P T V+ P P RA SP + TS ++ + T +
Sbjct: 1030 PKGCPVTSTPVTAPST------PSGRATSPTQSTSSWQKSRTTTLVT-----------TS 1072
Query: 1211 THETYATARYDRVYINMRYTLTPTTFDNTAYNVTRLPRSSASLPPTARTTSSSLRHILIP 1032
T T T+ + TP+T + T P +S + PT RTTS
Sbjct: 1073 TTSTPQTSTTSAPTTSTIPASTPSTTSAPTTSTTSAPTTSTTSAPTHRTTSGPTTS---- 1128
Query: 1031 LRTLIPQSPSTAGPATHPLASP 966
TL P + +T+ P T ++P
Sbjct: 1129 -TTLAPTTSTTSAPTTSTNSAP 1149
Score = 27.7 bits (60), Expect(2) = 1.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 921 PPANAVGTPQTYSVADPTAAHR-HPRSSATTSDSPGVTR--TVRRAGTPEXATLRRP 760
P + TPQT +++ PT + P++S T+S + T T P +T P
Sbjct: 771 PTTSTTSTPQTSTISSPTTSTTPTPQTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTP 827
Score = 26.6 bits (57), Expect(2) = 1.9
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 5/68 (7%)
Frame = -3
Query: 1154 TLTPTTFDNTA--YNVTRLPRSSASLPPTARTTSS-SLRHILIPLRTLI--PQSPSTAGP 990
T PTT +A + T P+++ S PT+ TTS+ + I P + I P + +T+ P
Sbjct: 673 TSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAPTTSTISAPTTSTISAPTTSTTSAP 732
Query: 989 ATHPLASP 966
++P
Sbjct: 733 TASTTSAP 740
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 90954524349
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)