BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE039490.f
(1197 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA b... 45 0.002
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 45 0.002
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm30... 45 0.002
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens] 45 0.002
pir||T02345 hypothetical protein KIAA0324 - human (fragment... 45 0.002
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo
sapiens]|gi|5821153|dbj|BAA83718.1| RNA binding protein
[Homo sapiens]
Length = 2752
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/144 (22%), Positives = 61/144 (41%)
Frame = +2
Query: 245 NAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTEHKTNHQARTQPNAKKANKKRNQPAT 424
++ PA ++S T SS R ++T P + + ++RT P K ++ R PAT
Sbjct: 1821 HSRSPARQESSRT-----SSRRRRGRSRTPPTSRKRS---RSRTSPAPWKRSRSRASPAT 1872
Query: 425 HKTNTTRRKTDRQKHTRLHTRPANNMKSRHKEXXXXXXXXXXXXNDTRRTTQAYRPTPNT 604
H+ + +R ++ +R T P + +SR + +RR +++ P P T
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP-PVT 1931
Query: 605 KNRAXXXXXXXXXXXTAH*PTQTR 676
+ R+ + P TR
Sbjct: 1932 RRRSRSRTPTTRRRSRSRTPPVTR 1955
Score = 40.8 bits (94), Expect = 0.041
Identities = 26/116 (22%), Positives = 54/116 (46%)
Frame = +2
Query: 170 TETKTPFTPPQRHQ*NTPTTQDSTTNAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTE 349
+ ++TP +R + TPTT+ + + P R+ + + R ++T P T
Sbjct: 1923 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT--RRRSRSRTSPIT-- 1978
Query: 350 HKTNHQARTQPNAKKANKKRNQPATHKTNTTRRKTDRQKHTRLHTRPANNMKSRHK 517
+ ++RT P ++ ++ R P T + + +R ++ +R T PA +SR +
Sbjct: 1979 -RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSR 2033
Score = 39.7 bits (91), Expect = 0.091
Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 9/214 (4%)
Frame = +1
Query: 130 EETQTTARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERP 309
++ ++ R + S R PPA TP+ H T + + N S A
Sbjct: 342 KKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTR 401
Query: 310 PGTPHTDP---PQHNRTQN*PPSPNPAK--RKESQQKEEP-ARHAQDKHNPKKDRPTKTH 471
+P P PQ + +++ PPSP P K R S E P A H PT +
Sbjct: 402 DRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKN 461
Query: 472 TPPHQTSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPTHPQHKKPRAQTGQTPQARQD 651
+ + PT H + R +PQ R+
Sbjct: 462 RSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSR-----SPQWRRS 516
Query: 652 RTLANTDKKHPNTHR---TAAPRPTHTKEKRTQR 744
R+ + R + RP ++ + TQR
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQR 550
Score = 38.1 bits (87), Expect = 0.27
Identities = 27/103 (26%), Positives = 48/103 (46%)
Frame = +1
Query: 148 ARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERPPGTPHT 327
+R A G R ++TP +R E TR +R +++S + S++ P T
Sbjct: 1665 SRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKARLSRRSRSASSS----PETRSR 1719
Query: 328 DPPQHNRTQN*PPSPNPAKRKESQQKEEPARHAQDKHNPKKDR 456
PP+H R+ + SP PA++ S ++ A + K ++ R
Sbjct: 1720 TPPRHRRSPS-VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 1761
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/144 (22%), Positives = 61/144 (41%)
Frame = +2
Query: 245 NAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTEHKTNHQARTQPNAKKANKKRNQPAT 424
++ PA ++S T SS R ++T P + + ++RT P K ++ R PAT
Sbjct: 344 HSRSPARQESSRT-----SSRRRRGRSRTPPTSRKRS---RSRTSPAPWKRSRSRASPAT 395
Query: 425 HKTNTTRRKTDRQKHTRLHTRPANNMKSRHKEXXXXXXXXXXXXNDTRRTTQAYRPTPNT 604
H+ + +R ++ +R T P + +SR + +RR +++ P P T
Sbjct: 396 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP-PVT 454
Query: 605 KNRAXXXXXXXXXXXTAH*PTQTR 676
+ R+ + P TR
Sbjct: 455 RRRSRSRTPTTRRRSRSRTPPVTR 478
Score = 40.8 bits (94), Expect = 0.041
Identities = 26/116 (22%), Positives = 54/116 (46%)
Frame = +2
Query: 170 TETKTPFTPPQRHQ*NTPTTQDSTTNAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTE 349
+ ++TP +R + TPTT+ + + P R+ + + R ++T P T
Sbjct: 446 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT--RRRSRSRTSPIT-- 501
Query: 350 HKTNHQARTQPNAKKANKKRNQPATHKTNTTRRKTDRQKHTRLHTRPANNMKSRHK 517
+ ++RT P ++ ++ R P T + + +R ++ +R T PA +SR +
Sbjct: 502 -RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSR 556
Score = 38.1 bits (87), Expect = 0.27
Identities = 27/103 (26%), Positives = 48/103 (46%)
Frame = +1
Query: 148 ARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERPPGTPHT 327
+R A G R ++TP +R E TR +R +++S + S++ P T
Sbjct: 188 SRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKARLSRRSRSASSS----PETRSR 242
Query: 328 DPPQHNRTQN*PPSPNPAKRKESQQKEEPARHAQDKHNPKKDR 456
PP+H R+ + SP PA++ S ++ A + K ++ R
Sbjct: 243 TPPRHRRSPS-VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 284
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/144 (22%), Positives = 61/144 (41%)
Frame = +2
Query: 245 NAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTEHKTNHQARTQPNAKKANKKRNQPAT 424
++ PA ++S T SS R ++T P + + ++RT P K ++ R PAT
Sbjct: 1821 HSRSPARQESSRT-----SSRRRRGRSRTPPTSRKRS---RSRTSPAPWKRSRSRASPAT 1872
Query: 425 HKTNTTRRKTDRQKHTRLHTRPANNMKSRHKEXXXXXXXXXXXXNDTRRTTQAYRPTPNT 604
H+ + +R ++ +R T P + +SR + +RR +++ P P T
Sbjct: 1873 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP-PVT 1931
Query: 605 KNRAXXXXXXXXXXXTAH*PTQTR 676
+ R+ + P TR
Sbjct: 1932 RRRSRSRTPTTRRRSRSRTPPVTR 1955
Score = 39.7 bits (91), Expect = 0.091
Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 9/214 (4%)
Frame = +1
Query: 130 EETQTTARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERP 309
++ ++ R + S R PPA TP+ H T + + N S A
Sbjct: 342 KKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTR 401
Query: 310 PGTPHTDP---PQHNRTQN*PPSPNPAK--RKESQQKEEP-ARHAQDKHNPKKDRPTKTH 471
+P P PQ + +++ PPSP P K R S E P A H PT +
Sbjct: 402 DRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKN 461
Query: 472 TPPHQTSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIPTHPQHKKPRAQTGQTPQARQD 651
+ + PT H + R +PQ R+
Sbjct: 462 RSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSR-----SPQWRRS 516
Query: 652 RTLANTDKKHPNTHR---TAAPRPTHTKEKRTQR 744
R+ + R + RP ++ + TQR
Sbjct: 517 RSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQR 550
Score = 38.1 bits (87), Expect = 0.27
Identities = 24/110 (21%), Positives = 51/110 (45%)
Frame = +2
Query: 170 TETKTPFTPPQRHQ*NTPTTQDSTTNAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTE 349
+ ++TP +R + TPTT+ + + P R+ + + R ++T P T
Sbjct: 1923 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT--RRRSRSRTSPIT-- 1978
Query: 350 HKTNHQARTQPNAKKANKKRNQPATHKTNTTRRKTDRQKHTRLHTRPANN 499
+ ++RT P ++ ++ R P T + + +R ++ +R T PA +
Sbjct: 1979 -RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAQD 2027
Score = 38.1 bits (87), Expect = 0.27
Identities = 27/103 (26%), Positives = 48/103 (46%)
Frame = +1
Query: 148 ARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERPPGTPHT 327
+R A G R ++TP +R E TR +R +++S + S++ P T
Sbjct: 1665 SRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKARLSRRSRSASSS----PETRSR 1719
Query: 328 DPPQHNRTQN*PPSPNPAKRKESQQKEEPARHAQDKHNPKKDR 456
PP+H R+ + SP PA++ S ++ A + K ++ R
Sbjct: 1720 TPPRHRRSPS-VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 1761
>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
Length = 1783
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/144 (22%), Positives = 61/144 (41%)
Frame = +2
Query: 245 NAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTEHKTNHQARTQPNAKKANKKRNQPAT 424
++ PA ++S T SS R ++T P + + ++RT P K ++ R PAT
Sbjct: 852 HSRSPARQESSRT-----SSRRRRGRSRTPPTSRKRS---RSRTSPAPWKRSRSRASPAT 903
Query: 425 HKTNTTRRKTDRQKHTRLHTRPANNMKSRHKEXXXXXXXXXXXXNDTRRTTQAYRPTPNT 604
H+ + +R ++ +R T P + +SR + +RR +++ P P T
Sbjct: 904 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP-PVT 962
Query: 605 KNRAXXXXXXXXXXXTAH*PTQTR 676
+ R+ + P TR
Sbjct: 963 RRRSRSRTPTTRRRSRSRTPPVTR 986
Score = 40.8 bits (94), Expect = 0.041
Identities = 26/116 (22%), Positives = 54/116 (46%)
Frame = +2
Query: 170 TETKTPFTPPQRHQ*NTPTTQDSTTNAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTE 349
+ ++TP +R + TPTT+ + + P R+ + + R ++T P T
Sbjct: 954 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT--RRRSRSRTSPIT-- 1009
Query: 350 HKTNHQARTQPNAKKANKKRNQPATHKTNTTRRKTDRQKHTRLHTRPANNMKSRHK 517
+ ++RT P ++ ++ R P T + + +R ++ +R T PA +SR +
Sbjct: 1010 -RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSR 1064
Score = 38.1 bits (87), Expect = 0.27
Identities = 27/103 (26%), Positives = 48/103 (46%)
Frame = +1
Query: 148 ARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERPPGTPHT 327
+R A G R ++TP +R E TR +R +++S + S++ P T
Sbjct: 696 SRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKARLSRRSRSASSS----PETRSR 750
Query: 328 DPPQHNRTQN*PPSPNPAKRKESQQKEEPARHAQDKHNPKKDR 456
PP+H R+ + SP PA++ S ++ A + K ++ R
Sbjct: 751 TPPRHRRSPS-VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 792
>pir||T02345 hypothetical protein KIAA0324 - human
(fragment)|gi|2996650|gb|AAC08453.1| KIAA0324 [Homo
sapiens]
Length = 1791
Score = 45.1 bits (105), Expect = 0.002
Identities = 33/144 (22%), Positives = 61/144 (41%)
Frame = +2
Query: 245 NAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTEHKTNHQARTQPNAKKANKKRNQPAT 424
++ PA ++S T SS R ++T P + + ++RT P K ++ R PAT
Sbjct: 853 HSRSPARQESSRT-----SSRRRRGRSRTPPTSRKRS---RSRTSPAPWKRSRSRASPAT 904
Query: 425 HKTNTTRRKTDRQKHTRLHTRPANNMKSRHKEXXXXXXXXXXXXNDTRRTTQAYRPTPNT 604
H+ + +R ++ +R T P + +SR + +RR +++ P P T
Sbjct: 905 HRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP-PVT 963
Query: 605 KNRAXXXXXXXXXXXTAH*PTQTR 676
+ R+ + P TR
Sbjct: 964 RRRSRSRTPTTRRRSRSRTPPVTR 987
Score = 40.8 bits (94), Expect = 0.041
Identities = 26/116 (22%), Positives = 54/116 (46%)
Frame = +2
Query: 170 TETKTPFTPPQRHQ*NTPTTQDSTTNAHGPAERQSKATTVAQQSSDHRAHHTQTHPNTTE 349
+ ++TP +R + TPTT+ + + P R+ + + R ++T P T
Sbjct: 955 SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVT--RRRSRSRTSPIT-- 1010
Query: 350 HKTNHQARTQPNAKKANKKRNQPATHKTNTTRRKTDRQKHTRLHTRPANNMKSRHK 517
+ ++RT P ++ ++ R P T + + +R ++ +R T PA +SR +
Sbjct: 1011 -RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSR 1065
Score = 38.1 bits (87), Expect = 0.27
Identities = 27/103 (26%), Positives = 48/103 (46%)
Frame = +1
Query: 148 ARKATSGYRDQNTLYPPAKTPVEHTHHTRQHDERTRTSRTTKQSNNRSTAIERPPGTPHT 327
+R A G R ++TP +R E TR +R +++S + S++ P T
Sbjct: 697 SRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKARLSRRSRSASSS----PETRSR 751
Query: 328 DPPQHNRTQN*PPSPNPAKRKESQQKEEPARHAQDKHNPKKDR 456
PP+H R+ + SP PA++ S ++ A + K ++ R
Sbjct: 752 TPPRHRRSPS-VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 793
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.310 0.123 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 125
effective length of database: 261,807,791
effective search space used: 71473526943
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)