BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE037825.f
(1489 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_012089.1| Hypothetical ORF; Yhr217cp [Saccharomyces ... 43 0.014
dbj|BAB02319.1| transcription factor-like protein [Arabidop... 39 0.21
ref|NP_566467.2| myb family transcription factor; protein i... 39 0.21
pir||S54157 extensin-like protein - cowpea (fragment) 38 0.46
gb|AAN63608.1| ligand-independent activating molecule for e... 37 1.0
>ref|NP_012089.1| Hypothetical ORF; Yhr217cp [Saccharomyces
cerevisiae]|gi|731584|sp|P38898|YH17_YEAST HYPOTHETICAL
17.1 KD PROTEIN IN PUR5 3'REGION|gi|626712|pir||S48998
hypothetical protein YHR217c - yeast (Saccharomyces
cerevisiae)|gi|551324|gb|AAB69740.1| Yhr217cp
[Saccharomyces cerevisiae]
Length = 153
Score = 42.7 bits (99), Expect = 0.014
Identities = 30/91 (32%), Positives = 34/91 (36%), Gaps = 9/91 (9%)
Frame = +3
Query: 336 HSH---HAHRLLILALPSPHPHLXYRQALPTSLCWSFLYHRSSQPTPAQSHQPTNFIS-- 500
H H H H P PHPH + PT PTP +H P +S
Sbjct: 29 HPHTPTHTHPHTPTPTPHPHPHTPHPHTTPT-------------PTPHHTHTPHTTLSNL 75
Query: 501 ----PSHLPLSPTASLTHLLPPLSRLILTST 581
PSH P SP +L H PL I ST
Sbjct: 76 SLNLPSHYPTSPLVTLPHSTIPLPTTIHLST 106
>dbj|BAB02319.1| transcription factor-like protein [Arabidopsis thaliana]
Length = 358
Score = 38.9 bits (89), Expect = 0.21
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Frame = +3
Query: 336 HSHHAHRLLILALPSPHPHLXYRQALPTSLCWSFLYHRSSQPTPAQSHQPT--------- 488
H HH H H HL +L T+L YH PT
Sbjct: 119 HHHHGHH---------HHHLSSMASLLTNLP----YHNGFNPTTVDDESSRFMSNIITNT 165
Query: 489 --NFISPSHLPLSPTASLTHLLPPLSR-----LILTSTSTCLHQYSTLHLSYFSTLQYQY 647
NFI+PSHL L +T L+ P SR + T+ H + H + L
Sbjct: 166 NPNFITPSHLSLPSPHVMTPLMFPTSREGDFKFLTTNNPNQSHHHDNNHYNNLDILSPTP 225
Query: 648 RSLLYXPILLSSTMSHISTHYVALIDLPHSSITPYR 755
+ LSS + + AL D P S+I+ ++
Sbjct: 226 TINNHHQPSLSSCPHDNNLQWPALPDFPASTISGFQ 261
>ref|NP_566467.2| myb family transcription factor; protein id: At3g13890.1, supported
by cDNA: gi_5823326 [Arabidopsis
thaliana]|gi|5823327|gb|AAD53102.1|AF175997_1 putative
transcription factor [Arabidopsis thaliana]
Length = 367
Score = 38.9 bits (89), Expect = 0.21
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Frame = +3
Query: 336 HSHHAHRLLILALPSPHPHLXYRQALPTSLCWSFLYHRSSQPTPAQSHQPT--------- 488
H HH H H HL +L T+L YH PT
Sbjct: 128 HHHHGHH---------HHHLSSMASLLTNLP----YHNGFNPTTVDDESSRFMSNIITNT 174
Query: 489 --NFISPSHLPLSPTASLTHLLPPLSR-----LILTSTSTCLHQYSTLHLSYFSTLQYQY 647
NFI+PSHL L +T L+ P SR + T+ H + H + L
Sbjct: 175 NPNFITPSHLSLPSPHVMTPLMFPTSREGDFKFLTTNNPNQSHHHDNNHYNNLDILSPTP 234
Query: 648 RSLLYXPILLSSTMSHISTHYVALIDLPHSSITPYR 755
+ LSS + + AL D P S+I+ ++
Sbjct: 235 TINNHHQPSLSSCPHDNNLQWPALPDFPASTISGFQ 270
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 37.7 bits (86), Expect = 0.46
Identities = 25/74 (33%), Positives = 37/74 (49%), Gaps = 8/74 (10%)
Frame = +1
Query: 1087 LLXSFTILFYSHY-----SSHISLLIYIPTSHASYHHLLPISSHYYSFSHLLP---PSTT 1242
LL ++F SH+ H+ + I H +HHLL +SH+ HLLP P T
Sbjct: 19 LLHHHLLMFTSHHLLHLLPHHLHMCISRHHHHLLHHHLLMFTSHH--LLHLLPHHLPMFT 76
Query: 1243 LIHSPLLLPSYIPL 1284
+H LLP ++P+
Sbjct: 77 SLHLLHLLPHHLPM 90
>gb|AAN63608.1| ligand-independent activating molecule for estrogen receptor
[Rattus norvegicus]
Length = 242
Score = 36.6 bits (83), Expect = 1.0
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Frame = +3
Query: 339 SHHAHRLLILALPSPHPHLXYRQALPTSLCWS-------FLYHRS---SQPTPAQS-HQP 485
SHH H+ L+ +P P + TS+C S F +HR + P P + H
Sbjct: 3 SHHHHQCLLF---TPPPPVSALHTTTTSVCSSHHHQCLLFNHHRCLLFTPPPPVSALHTT 59
Query: 486 TNFISPSHLPLSPTASLTHLLPPLSRL---ILTSTSTCLHQYSTLHLSYFSTLQYQYRSL 656
T + SH L PPLS L T+TS C H +++ S+ + ++ L
Sbjct: 60 TTSVCSSH----HHHCLLFTPPPLSALHTTTTTTTSVCFHTITSVCSSH-----HHHQCL 110
Query: 657 LYXPILLS---STMSHISTHY 710
L+ P LS +T + S+H+
Sbjct: 111 LFTPPPLSALHTTTTVCSSHH 131
Score = 33.9 bits (76), Expect = 6.7
Identities = 36/129 (27%), Positives = 50/129 (37%), Gaps = 5/129 (3%)
Frame = +3
Query: 339 SHHAHRLLILALPSPHPHLXYRQALPTSLCWSFLYH--RSSQPTPAQSHQPTNFISPSHL 512
SHH H LL P L TS+C S +H + P P + T + SH
Sbjct: 129 SHHHHCLLFTP-----PPLSALHTTTTSVCSSHHHHCLLFTPPPPVSALHTTTSVCSSH- 182
Query: 513 PLSPTASLTHLLPPLSRLILTSTSTCLHQYSTLHLSYFSTLQYQYRSLLYXP---ILLSS 683
L PPLS L T+TS C + + ++ LL+ P L +
Sbjct: 183 ---HHQCLLFTPPPLSALHTTTTSVC-------------SSHHHHQCLLFTPPPVSALHT 226
Query: 684 TMSHISTHY 710
T S S+H+
Sbjct: 227 TTSVCSSHH 235
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 95359729232
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)