BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BE037824.f
         (1498 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||S54157  extensin-like protein - cowpea (fragment)             48   5e-04
pir||T03221  probable polyketide synthase module 1 - Strepto...    34   6.7  
ref|XP_195731.1|  similar to DYNEIN HEAVY CHAIN (DYHC) [Mus ...    34   6.7  
gb|AAN63608.1|  ligand-independent activating molecule for e...    34   6.7  
dbj|BAC40548.1|  unnamed protein product [Mus musculus]            33   8.8  

>pir||S54157 extensin-like protein - cowpea (fragment)
          Length = 279

 Score = 47.8 bits (112), Expect = 5e-04
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
 Frame = +2

Query: 818  FTKRCITSILHNYLHPCLSLSRRVSYYTISTRHIHA*SSHIHCTTLYLCHHSVIIDFSIA 997
            FT   +  +L ++LH C+S        + S  H H    H+  +T +   H ++    + 
Sbjct: 107  FTSHHLLHLLPHHLHMCISRHHHHLPMSTSPHHHHLLHHHLPMSTSHPLLHLLLHHLHMC 166

Query: 998  IA*FYSPSTPYHTTLMIHTPLNTQPTTISLLCVKIDN-TRVHAPLLFPNTSPTCM-PHHN 1171
            I      S  +H  L +  P  T P  + LL   +   T +H   L P+  P C+ PHH+
Sbjct: 167  I------SHHHHHLLHLRLPTFTSPHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHH 220

Query: 1172 ---YHTLLLVVPIYMLRLL--FFYLLSSIHHPYVL 1261
               +H LL+    ++L LL    ++  S HH ++L
Sbjct: 221  HLLHHHLLMFTSHHLLHLLPHHLHMCISRHHHHLL 255




 Score = 35.0 bits (79), Expect = 3.0
 Identities = 39/163 (23%), Positives = 68/163 (40%), Gaps = 14/163 (8%)
 Frame = +2

Query: 842  ILHNYLHPCLSLSRR---VSYYTISTRH--IHA*SSHIH-CTTLYLCHHSVIIDFSIAIA 1003
            +LH++LH C+S  R      +  + T H  +H    H+H C + +  HH ++        
Sbjct: 3    LLHHHLHMCISHHRHHLLHHHLLMFTSHHLLHLLPHHLHMCISRH--HHHLL-------- 52

Query: 1004 *FYSPSTPYHTTLMI--HTPLNTQPTTISLLCVKIDNTRVHAPLLFPNTSPTCMPHHNYH 1177
                    +H  LM   H  L+  P  + +       T +H   L P+  P C+  H++H
Sbjct: 53   --------HHHLLMFTSHHLLHLLPHHLPMF------TSLHLLHLLPHHLPMCISPHHHH 98

Query: 1178 T----LLLVVPIYMLRLL--FFYLLSSIHHPYVLFLTXVRSYH 1288
                 LL+    ++L LL    ++  S HH ++   T    +H
Sbjct: 99   LLHRHLLMFTSHHLLHLLPHHLHMCISRHHHHLPMSTSPHHHH 141



>pir||T03221 probable polyketide synthase module 1 - Streptomyces
            hygroscopicus|gi|2624948|gb|AAC38061.1| PKS module 1
            [Streptomyces hygroscopicus]
          Length = 2723

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 20/44 (45%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
 Frame = +2

Query: 1031 HTTL---MIHTPLN-TQPTTISLLCVKIDNTRVHAPLLFPNTSP 1150
            HTTL   +IHTP+  T PTTI L     DNT  H   +    SP
Sbjct: 1932 HTTLDELIIHTPITLTHPTTIQLTISPPDNTNTHTLTVHTRNSP 1975



>ref|XP_195731.1| similar to DYNEIN HEAVY CHAIN (DYHC) [Mus musculus]
          Length = 391

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 31/112 (27%), Positives = 43/112 (37%)
 Frame = +1

Query: 1084 SPLRQDRQHTRPRASTLSKHVTHLYASPQLPYPTTSSTYLYAPTIILLPSLIHTSSICLI 1263
            +P+     HT+   STL  +  H +    LPY   +S  +Y P    LP  ++T    L 
Sbjct: 62   TPIHSLHSHTQ---STLP-YSLHSHTQSTLPYTVYNSHTVYTPIQSTLPYTVYTPVHSLH 117

Query: 1264 SHASTLLS*LPTIMFIRLLMYLSSLRLDVSDSPYPYRSHHFYTPIP*LHRYT 1419
            SH                    S+L   V    +   SH  YTPI  LH +T
Sbjct: 118  SHTQ------------------STLPYTVYTPIHSLHSHTVYTPIHTLHSHT 151



>gb|AAN63608.1| ligand-independent activating molecule for estrogen receptor [Rattus
            norvegicus]
          Length = 242

 Score = 33.9 bits (76), Expect = 6.7
 Identities = 36/157 (22%), Positives = 59/157 (36%), Gaps = 22/157 (14%)
 Frame = +2

Query: 860  HPCLSLSRRVSYYTISTRHIHA*SSHIHCTTLYLCHHSVIIDFSIAIA*FYSPSTP---- 1027
            H CL  +       + T      SSH H   L+  H  ++      ++  ++ +T     
Sbjct: 7    HQCLLFTPPPPVSALHTTTTSVCSSHHHQCLLFNHHRCLLFTPPPPVSALHTTTTSVCSS 66

Query: 1028 YHTTLMIHTP-----LNTQPTTISLLCVKI-----DNTRVHAPLLFP--------NTSPT 1153
            +H   ++ TP     L+T  TT + +C         +   H  LLF          T+  
Sbjct: 67   HHHHCLLFTPPPLSALHTTTTTTTSVCFHTITSVCSSHHHHQCLLFTPPPLSALHTTTTV 126

Query: 1154 CMPHHNYHTLLLVVPIYMLRLLFFYLLSSIHHPYVLF 1264
            C  HH++  L    P+  L      + SS HH  +LF
Sbjct: 127  CSSHHHHCLLFTPPPLSALHTTTTSVCSSHHHHCLLF 163



>dbj|BAC40548.1| unnamed protein product [Mus musculus]
          Length = 527

 Score = 33.5 bits (75), Expect = 8.8
 Identities = 28/95 (29%), Positives = 40/95 (41%), Gaps = 4/95 (4%)
 Frame = +1

Query: 1069 ANHYISPLRQDRQHTRPRASTLSK----HVTHLYASPQLPYPTTSSTYLYAPTIILLPSL 1236
            AN   S  R D +H       L+K     +   Y  P LPYP   +T LY  T  L  + 
Sbjct: 330  ANELNSSCRFDSRHLAAALDNLNKALLADIEAHYRDPSLPYPKEDNTLLYEITAYLEAAG 389

Query: 1237 IHTSSICLISHASTLLS*LPTIMFIRLLMYLSSLR 1341
            IH + +  I   +  L   P + F+ L+  L  L+
Sbjct: 390  IH-NPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQ 423



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 96137118329
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)