BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AV566879.r (597 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM65243.1|  putative carboxyl-terminal peptidase [Arabid...   421   e-117
ref|NP_566457.1|  expressed protein; protein id: At3g13510.1...   421   e-117
ref|NP_175933.1|  unknown protein; protein id: At1g55360.1 [...   404   e-112
gb|AAO00777.1|  unknown protein [Arabidopsis thaliana]            402   e-111
ref|NP_200464.1|  putative protein; protein id: At5g56530.1,...   371   e-102

>gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis thaliana]
          Length = 419

 Score =  421 bits (1082), Expect = e-117
 Identities = 197/198 (99%), Positives = 197/198 (99%)
 Frame = +3

Query: 3   ETHIPQLWHRYGICTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 182
           ETHIPQLWHRYG CTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN
Sbjct: 110 ETHIPQLWHRYGKCTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 169

Query: 183 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 362
           GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS
Sbjct: 170 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 229

Query: 363 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 542
           PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS
Sbjct: 230 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 289

Query: 543 ILIWKDPKEGHWWMQFGN 596
           ILIWKDPKEGHWWMQFGN
Sbjct: 290 ILIWKDPKEGHWWMQFGN 307

>ref|NP_566457.1| expressed protein; protein id: At3g13510.1, supported by cDNA:
           37810., supported by cDNA: gi_18700164 [Arabidopsis
           thaliana]|gi|9280303|dbj|BAB01758.1|
           gb|AAC16072.1~gene_id:MRP15.17~strong similarity to
           unknown protein [Arabidopsis
           thaliana]|gi|18700165|gb|AAL77694.1| AT3g13510/MRP15_15
           [Arabidopsis thaliana]|gi|24797030|gb|AAN64527.1|
           At3g13510/MRP15_15 [Arabidopsis thaliana]
          Length = 419

 Score =  421 bits (1082), Expect = e-117
 Identities = 197/198 (99%), Positives = 197/198 (99%)
 Frame = +3

Query: 3   ETHIPQLWHRYGICTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 182
           ETHIPQLWHRYG CTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN
Sbjct: 110 ETHIPQLWHRYGKCTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 169

Query: 183 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 362
           GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS
Sbjct: 170 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 229

Query: 363 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 542
           PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS
Sbjct: 230 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 289

Query: 543 ILIWKDPKEGHWWMQFGN 596
           ILIWKDPKEGHWWMQFGN
Sbjct: 290 ILIWKDPKEGHWWMQFGN 307

>ref|NP_175933.1| unknown protein; protein id: At1g55360.1 [Arabidopsis
           thaliana]|gi|25345698|pir||H96595 unknown protein,
           9920-11896 [imported] - Arabidopsis
           thaliana|gi|12323166|gb|AAG51562.1|AC027034_8 unknown
           protein; 9920-11896 [Arabidopsis
           thaliana]|gi|24417260|gb|AAN60240.1| unknown
           [Arabidopsis thaliana]
          Length = 422

 Score =  404 bits (1039), Expect = e-112
 Identities = 188/198 (94%), Positives = 193/198 (96%)
 Frame = +3

Query: 3   ETHIPQLWHRYGICTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 182
           E HIPQLWHRYG C+EGTIPMRRT+EDDVLRASSVKRYGKKK RSVP+PKSAEPDLINQ+
Sbjct: 113 EGHIPQLWHRYGKCSEGTIPMRRTKEDDVLRASSVKRYGKKKRRSVPLPKSAEPDLINQS 172

Query: 183 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 362
           GHQHAIAYVEGDKYYGAKAT+NVWEPKIQ  NEFSLSQIWLLGGSFGQDLNSIEAGWQVS
Sbjct: 173 GHQHAIAYVEGDKYYGAKATINVWEPKIQQQNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 232

Query: 363 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 542
           PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS
Sbjct: 233 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 292

Query: 543 ILIWKDPKEGHWWMQFGN 596
           ILIWKDPKEGHWWMQFGN
Sbjct: 293 ILIWKDPKEGHWWMQFGN 310

>gb|AAO00777.1| unknown protein [Arabidopsis thaliana]
          Length = 422

 Score =  402 bits (1033), Expect = e-111
 Identities = 187/198 (94%), Positives = 192/198 (96%)
 Frame = +3

Query: 3   ETHIPQLWHRYGICTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQN 182
           E HIPQLWHRYG C+EGTIPMRRT+EDDVLRASSVKRYGKKK RSVP+PKSAEPDLINQ+
Sbjct: 113 EGHIPQLWHRYGKCSEGTIPMRRTKEDDVLRASSVKRYGKKKRRSVPLPKSAEPDLINQS 172

Query: 183 GHQHAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 362
           GHQHAIAYVEGDKYYGAKAT+NVWEPKIQ  NEFSLSQIWLLGGSFGQDLNSIEAGWQVS
Sbjct: 173 GHQHAIAYVEGDKYYGAKATINVWEPKIQQQNEFSLSQIWLLGGSFGQDLNSIEAGWQVS 232

Query: 363 PDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 542
           PDLYGDNNTRLFTYWTSDAYQAT CYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS
Sbjct: 233 PDLYGDNNTRLFTYWTSDAYQATSCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDIS 292

Query: 543 ILIWKDPKEGHWWMQFGN 596
           ILIWKDPKEGHWWMQFGN
Sbjct: 293 ILIWKDPKEGHWWMQFGN 310

>ref|NP_200464.1| putative protein; protein id: At5g56530.1, supported by cDNA:
           gi_17381169 [Arabidopsis
           thaliana]|gi|8809628|dbj|BAA97179.1| contains similarity
           to carboxyl-terminal proteinase~gene_id:MKN22.4
           [Arabidopsis thaliana]|gi|17381170|gb|AAL36397.1|
           unknown protein [Arabidopsis
           thaliana]|gi|23296886|gb|AAN13196.1| unknown protein
           [Arabidopsis thaliana]
          Length = 420

 Score =  371 bits (953), Expect = e-102
 Identities = 167/195 (85%), Positives = 187/195 (95%)
 Frame = +3

Query: 12  IPQLWHRYGICTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQNGHQ 191
           I QLWH+ G+C+EGTIP+RRT+++DVLRASSVKRYGKKKH SVP+P+SA+PDLINQ+GHQ
Sbjct: 114 ITQLWHQNGVCSEGTIPVRRTKKEDVLRASSVKRYGKKKHLSVPLPRSADPDLINQSGHQ 173

Query: 192 HAIAYVEGDKYYGAKATLNVWEPKIQNTNEFSLSQIWLLGGSFGQDLNSIEAGWQVSPDL 371
           HAIAYVEG K+YGAKAT+NVWEPK+Q++NEFSLSQ+W+LGGSFGQDLNSIEAGWQVSPDL
Sbjct: 174 HAIAYVEGGKFYGAKATINVWEPKVQSSNEFSLSQLWILGGSFGQDLNSIEAGWQVSPDL 233

Query: 372 YGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSDIAMGASISPVSGYRNSQYDISILI 551
           YGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINS IAMGASISPVSG+ N QYDISI I
Sbjct: 234 YGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQINSQIAMGASISPVSGFHNPQYDISITI 293

Query: 552 WKDPKEGHWWMQFGN 596
           WKDPKEGHWWMQFG+
Sbjct: 294 WKDPKEGHWWMQFGD 308

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 22074132879
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results