BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV566536.r
(616 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200498.1| glycosyl hydrolase family 35 (beta-galacto... 435 e-121
gb|AAK96780.1| beta-galactosidase [Arabidopsis thaliana]|gi... 435 e-121
pir||T04269 probable beta-galactosidase (EC 3.2.1.23) - Ara... 367 e-101
emb|CAB64748.1| putative beta-galactosidase [Arabidopsis th... 367 e-101
ref|NP_194344.2| glycosyl hydrolase family 35 (beta-galacto... 367 e-101
>ref|NP_200498.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At5g56870.1, supported by cDNA: gi_15451017, supported
by cDNA: gi_17978798 [Arabidopsis
thaliana]|gi|6686880|emb|CAB64740.1| putative
beta-galactosidase [Arabidopsis
thaliana]|gi|8809655|dbj|BAA97206.1| beta-galactosidase
[Arabidopsis thaliana]
Length = 724
Score = 435 bits (1119), Expect = e-121
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 3 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 182
KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT
Sbjct: 202 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 261
Query: 183 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 362
DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE
Sbjct: 262 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 321
Query: 363 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 542
YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE
Sbjct: 322 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 381
Query: 543 NSAARVLFRGFPYDLPPWSVSILP 614
NSAARVLFRGFPYDLPPWSVSILP
Sbjct: 382 NSAARVLFRGFPYDLPPWSVSILP 405
>gb|AAK96780.1| beta-galactosidase [Arabidopsis
thaliana]|gi|17978799|gb|AAL47393.1| beta-galactosidase
[Arabidopsis thaliana]
Length = 724
Score = 435 bits (1118), Expect = e-121
Identities = 203/204 (99%), Positives = 204/204 (99%)
Frame = +3
Query: 3 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 182
KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT
Sbjct: 202 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 261
Query: 183 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 362
DFGGAVPYRPVEDIAYSVARFIQKGGSL+NYYMYHGGTNFDRTAGEFMASSYDYDAPLDE
Sbjct: 262 DFGGAVPYRPVEDIAYSVARFIQKGGSLINYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 321
Query: 363 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 542
YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE
Sbjct: 322 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 381
Query: 543 NSAARVLFRGFPYDLPPWSVSILP 614
NSAARVLFRGFPYDLPPWSVSILP
Sbjct: 382 NSAARVLFRGFPYDLPPWSVSILP 405
>pir||T04269 probable beta-galactosidase (EC 3.2.1.23) - Arabidopsis
thaliana|gi|4538943|emb|CAB39679.1| putative
beta-galactosidase [Arabidopsis
thaliana]|gi|7269465|emb|CAB79469.1| putative
beta-galactosidase [Arabidopsis thaliana]
Length = 729
Score = 367 bits (942), Expect = e-101
Identities = 171/204 (83%), Positives = 185/204 (89%)
Frame = +3
Query: 3 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 182
KWVA+MA GLSTGVPWIMCKQ+DAP II+TCNG+YCE+FKPNS NKPKMWTENWTGW+T
Sbjct: 202 KWVAEMAQGLSTGVPWIMCKQDDAPNSIINTCNGFYCENFKPNSDNKPKMWTENWTGWFT 261
Query: 183 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 362
+FGGAVPYRP EDIA SVARFIQ GGS +NYYMYHGGTNFDRTAGEF+A+SYDYDAPLDE
Sbjct: 262 EFGGAVPYRPAEDIALSVARFIQNGGSFINYYMYHGGTNFDRTAGEFIATSYDYDAPLDE 321
Query: 363 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 542
YGLPREPKYSHLK LHK IKL EPAL+SAD TVTSLG KQEA+VF SKSSCAAFLSN +
Sbjct: 322 YGLPREPKYSHLKRLHKVIKLCEPALVSADPTVTSLGDKQEAHVFKSKSSCAAFLSNYNT 381
Query: 543 NSAARVLFRGFPYDLPPWSVSILP 614
+SAARVLF G YDLPPWSVSILP
Sbjct: 382 SSAARVLFGGSTYDLPPWSVSILP 405
>emb|CAB64748.1| putative beta-galactosidase [Arabidopsis thaliana]
Length = 728
Score = 367 bits (942), Expect = e-101
Identities = 171/204 (83%), Positives = 185/204 (89%)
Frame = +3
Query: 3 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 182
KWVA+MA GLSTGVPWIMCKQ+DAP II+TCNG+YCE+FKPNS NKPKMWTENWTGW+T
Sbjct: 202 KWVAEMAQGLSTGVPWIMCKQDDAPNSIINTCNGFYCENFKPNSDNKPKMWTENWTGWFT 261
Query: 183 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 362
+FGGAVPYRP EDIA SVARFIQ GGS +NYYMYHGGTNFDRTAGEF+A+SYDYDAPLDE
Sbjct: 262 EFGGAVPYRPAEDIALSVARFIQNGGSFINYYMYHGGTNFDRTAGEFIATSYDYDAPLDE 321
Query: 363 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 542
YGLPREPKYSHLK LHK IKL EPAL+SAD TVTSLG KQEA+VF SKSSCAAFLSN +
Sbjct: 322 YGLPREPKYSHLKRLHKVIKLCEPALVSADPTVTSLGDKQEAHVFKSKSSCAAFLSNYNT 381
Query: 543 NSAARVLFRGFPYDLPPWSVSILP 614
+SAARVLF G YDLPPWSVSILP
Sbjct: 382 SSAARVLFGGSTYDLPPWSVSILP 405
>ref|NP_194344.2| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At4g26140.1, supported by cDNA: gi_20466291 [Arabidopsis
thaliana]|gi|20466292|gb|AAM20463.1| putative
beta-galactosidase [Arabidopsis
thaliana]|gi|23198118|gb|AAN15586.1| putative
beta-galactosidase [Arabidopsis thaliana]
Length = 636
Score = 367 bits (942), Expect = e-101
Identities = 171/204 (83%), Positives = 185/204 (89%)
Frame = +3
Query: 3 KWVAQMALGLSTGVPWIMCKQEDAPGPIIDTCNGYYCEDFKPNSINKPKMWTENWTGWYT 182
KWVA+MA GLSTGVPWIMCKQ+DAP II+TCNG+YCE+FKPNS NKPKMWTENWTGW+T
Sbjct: 202 KWVAEMAQGLSTGVPWIMCKQDDAPNSIINTCNGFYCENFKPNSDNKPKMWTENWTGWFT 261
Query: 183 DFGGAVPYRPVEDIAYSVARFIQKGGSLVNYYMYHGGTNFDRTAGEFMASSYDYDAPLDE 362
+FGGAVPYRP EDIA SVARFIQ GGS +NYYMYHGGTNFDRTAGEF+A+SYDYDAPLDE
Sbjct: 262 EFGGAVPYRPAEDIALSVARFIQNGGSFINYYMYHGGTNFDRTAGEFIATSYDYDAPLDE 321
Query: 363 YGLPREPKYSHLKALHKAIKLSEPALLSADATVTSLGAKQEAYVFWSKSSCAAFLSNKDE 542
YGLPREPKYSHLK LHK IKL EPAL+SAD TVTSLG KQEA+VF SKSSCAAFLSN +
Sbjct: 322 YGLPREPKYSHLKRLHKVIKLCEPALVSADPTVTSLGDKQEAHVFKSKSSCAAFLSNYNT 381
Query: 543 NSAARVLFRGFPYDLPPWSVSILP 614
+SAARVLF G YDLPPWSVSILP
Sbjct: 382 SSAARVLFGGSTYDLPPWSVSILP 405
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 23709253833
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)