BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV564596.r
         (629 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA97409.1|  disease resistance protein-like [Arabidopsi...   429   e-119
ref|NP_198989.2|  disease resistance protein (TIR-NBS-LRR cl...   429   e-119
gb|AAN86124.1|  TIR-NBS-LRR [Arabidopsis thaliana]                374   e-103
gb|AAM97118.1|  disease resistance protein-like [Arabidopsis...   362   2e-99
dbj|BAA97410.1|  disease resistance protein-like [Arabidopsi...   362   2e-99

>dbj|BAA97409.1| disease resistance protein-like [Arabidopsis thaliana]
          Length = 1018

 Score =  429 bits (1103), Expect = e-119
 Identities = 209/209 (100%), Positives = 209/209 (100%)
 Frame = +1

Query: 1    LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN 180
            LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN
Sbjct: 725  LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN 784

Query: 181  PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS 360
            PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS
Sbjct: 785  PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS 844

Query: 361  ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP 540
            ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP
Sbjct: 845  ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP 904

Query: 541  QGNKYHEVDVTMSEITFEFSHTKIGDKII 627
            QGNKYHEVDVTMSEITFEFSHTKIGDKII
Sbjct: 905  QGNKYHEVDVTMSEITFEFSHTKIGDKII 933



>ref|NP_198989.2| disease resistance protein (TIR-NBS-LRR class), putative; protein id:
            At5g41740.1 [Arabidopsis thaliana]
          Length = 1046

 Score =  429 bits (1103), Expect = e-119
 Identities = 209/209 (100%), Positives = 209/209 (100%)
 Frame = +1

Query: 1    LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN 180
            LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN
Sbjct: 753  LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN 812

Query: 181  PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS 360
            PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS
Sbjct: 813  PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS 872

Query: 361  ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP 540
            ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP
Sbjct: 873  ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP 932

Query: 541  QGNKYHEVDVTMSEITFEFSHTKIGDKII 627
            QGNKYHEVDVTMSEITFEFSHTKIGDKII
Sbjct: 933  QGNKYHEVDVTMSEITFEFSHTKIGDKII 961



>gb|AAN86124.1| TIR-NBS-LRR [Arabidopsis thaliana]
          Length = 1055

 Score =  374 bits (960), Expect = e-103
 Identities = 184/209 (88%), Positives = 194/209 (92%)
 Frame = +1

Query: 1    LRGSGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHN 180
            L+GS IERI + +IGLTRLHWL V+SC KLKSILGLPSSL+ LDANDCVSLKRVRFSFHN
Sbjct: 765  LKGSDIERIPESIIGLTRLHWLIVESCIKLKSILGLPSSLQGLDANDCVSLKRVRFSFHN 824

Query: 181  PMHTLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLS 360
            P+H L+FNNCLKLDEEAKRGIIQRSVS YICLP K IPEEFTHKATG+SITIPLAPGTLS
Sbjct: 825  PIHILNFNNCLKLDEEAKRGIIQRSVSGYICLPGKNIPEEFTHKATGRSITIPLAPGTLS 884

Query: 361  ASSRFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHFLRVRSEHLFIFHGDLFP 540
            ASSRFKASILILPVESYE E I CSIRTKGGVEVHCCELPYHFLR RSEHL+IFHGDLFP
Sbjct: 885  ASSRFKASILILPVESYENEVIRCSIRTKGGVEVHCCELPYHFLRFRSEHLYIFHGDLFP 944

Query: 541  QGNKYHEVDVTMSEITFEFSHTKIGDKII 627
            QGNKYHEVDVTM EITFEFS+TKIGDKII
Sbjct: 945  QGNKYHEVDVTMREITFEFSYTKIGDKII 973



>gb|AAM97118.1| disease resistance protein-like [Arabidopsis thaliana]
          Length = 586

 Score =  362 bits (930), Expect = 2e-99
 Identities = 179/207 (86%), Positives = 191/207 (91%), Gaps = 1/207 (0%)
 Frame = +1

Query: 10  SGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMH 189
           S IE I + +IGLTRL WLNV+SCRKLKSILGLPSSL+ LDANDCVSLKRV FSFHNP+ 
Sbjct: 287 SNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIR 346

Query: 190 TLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASS 369
            L FNNCL LDEEA++GIIQ+SV RYICLP KKIPEEFTHKATG+SITIPL+PGTLSASS
Sbjct: 347 ALSFNNCLNLDEEARKGIIQQSVYRYICLPGKKIPEEFTHKATGRSITIPLSPGTLSASS 406

Query: 370 RFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHF-LRVRSEHLFIFHGDLFPQG 546
           RFKASILILPVESYET+ ISCS+RTKGGVEVHCCELPYHF LR RSEHLFIFHGDLFPQG
Sbjct: 407 RFKASILILPVESYETDDISCSLRTKGGVEVHCCELPYHFLLRSRSEHLFIFHGDLFPQG 466

Query: 547 NKYHEVDVTMSEITFEFSHTKIGDKII 627
           NKYHEVDVTMSEITFEFSHTKIGDKII
Sbjct: 467 NKYHEVDVTMSEITFEFSHTKIGDKII 493



>dbj|BAA97410.1| disease resistance protein-like [Arabidopsis thaliana]
          Length = 1068

 Score =  362 bits (930), Expect = 2e-99
 Identities = 179/207 (86%), Positives = 191/207 (91%), Gaps = 1/207 (0%)
 Frame = +1

Query: 10   SGIERITDCVIGLTRLHWLNVDSCRKLKSILGLPSSLKVLDANDCVSLKRVRFSFHNPMH 189
            S IE I + +IGLTRL WLNV+SCRKLKSILGLPSSL+ LDANDCVSLKRV FSFHNP+ 
Sbjct: 769  SNIESIPESIIGLTRLDWLNVNSCRKLKSILGLPSSLQDLDANDCVSLKRVCFSFHNPIR 828

Query: 190  TLDFNNCLKLDEEAKRGIIQRSVSRYICLPCKKIPEEFTHKATGKSITIPLAPGTLSASS 369
             L FNNCL LDEEA++GIIQ+SV RYICLP KKIPEEFTHKATG+SITIPL+PGTLSASS
Sbjct: 829  ALSFNNCLNLDEEARKGIIQQSVYRYICLPGKKIPEEFTHKATGRSITIPLSPGTLSASS 888

Query: 370  RFKASILILPVESYETEGISCSIRTKGGVEVHCCELPYHF-LRVRSEHLFIFHGDLFPQG 546
            RFKASILILPVESYET+ ISCS+RTKGGVEVHCCELPYHF LR RSEHLFIFHGDLFPQG
Sbjct: 889  RFKASILILPVESYETDDISCSLRTKGGVEVHCCELPYHFLLRSRSEHLFIFHGDLFPQG 948

Query: 547  NKYHEVDVTMSEITFEFSHTKIGDKII 627
            NKYHEVDVTMSEITFEFSHTKIGDKII
Sbjct: 949  NKYHEVDVTMSEITFEFSHTKIGDKII 975



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 24677481283
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)