BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV563668.r
(635 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96737 ARE1-like protein, 78992-73047 [imported] - Ara... 423 e-118
ref|NP_565015.1| ARE1-like protein; protein id: At1g71270.1... 423 e-118
ref|NP_177286.1| ARE1-like protein; protein id: At1g71300.1... 390 e-108
gb|AAL31062.1|AC090120_8 putative ARE1 protein [Oryza sativa] 218 5e-56
gb|AAH40114.1| SAC2 suppressor of actin mutations 2-like (y... 136 2e-31
>pir||D96737 ARE1-like protein, 78992-73047 [imported] - Arabidopsis
thaliana|gi|12323838|gb|AAG51892.1|AC016162_13 ARE1-like
protein; 78992-73047 [Arabidopsis thaliana]
Length = 735
Score = 423 bits (1088), Expect = e-118
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +1
Query: 1 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 180
LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED
Sbjct: 457 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 516
Query: 181 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 360
DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV
Sbjct: 517 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 576
Query: 361 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 540
FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE
Sbjct: 577 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 636
Query: 541 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 633
DSSLNPERSITIAEVEPLVKDFGSRWKTAIE
Sbjct: 637 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 667
>ref|NP_565015.1| ARE1-like protein; protein id: At1g71270.1, supported by cDNA:
gi_14194158 [Arabidopsis
thaliana]|gi|14194159|gb|AAK56274.1|AF367286_1
At1g71270/F3I17_8 [Arabidopsis thaliana]
Length = 707
Score = 423 bits (1088), Expect = e-118
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +1
Query: 1 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 180
LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED
Sbjct: 429 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 488
Query: 181 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 360
DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV
Sbjct: 489 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 548
Query: 361 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 540
FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE
Sbjct: 549 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 608
Query: 541 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 633
DSSLNPERSITIAEVEPLVKDFGSRWKTAIE
Sbjct: 609 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 639
>ref|NP_177286.1| ARE1-like protein; protein id: At1g71300.1 [Arabidopsis
thaliana]|gi|25406113|pir||G96737 ARE1-like protein,
68800-64545 [imported] - Arabidopsis
thaliana|gi|12323833|gb|AAG51887.1|AC016162_8 ARE1-like
protein; 68800-64545 [Arabidopsis thaliana]
Length = 701
Score = 390 bits (1002), Expect = e-108
Identities = 191/211 (90%), Positives = 202/211 (95%)
Frame = +1
Query: 1 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 180
L+LMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFK VFD H+ SLR+ANI T+WED
Sbjct: 423 LLLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKTVFDLHIGSLRNANINTIWED 482
Query: 181 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 360
DVHPHY+MRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVD LILKLAKLFPRPKQQ+V
Sbjct: 483 DVHPHYIMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDSLILKLAKLFPRPKQQMV 542
Query: 361 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 540
FLINNYDMTIAVLKEA PEGGKIQMHFEE+LKSNTSLF EELLVEHFSD+IKFVK+RA+E
Sbjct: 543 FLINNYDMTIAVLKEAEPEGGKIQMHFEELLKSNTSLFAEELLVEHFSDMIKFVKSRANE 602
Query: 541 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 633
DSS N ERSIT+AEVEPLVKDFGSRWKTAIE
Sbjct: 603 DSSPNLERSITVAEVEPLVKDFGSRWKTAIE 633
>gb|AAL31062.1|AC090120_8 putative ARE1 protein [Oryza sativa]
Length = 670
Score = 218 bits (555), Expect = 5e-56
Identities = 117/211 (55%), Positives = 144/211 (67%)
Frame = +1
Query: 1 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 180
LMLMI I HQ++ I LWPRFK VFD +L SL + K LW D
Sbjct: 410 LMLMICITRKHQVL-----------------IYLWPRFKTVFDMYLQSLYRCDTKLLWVD 452
Query: 181 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 360
HPH+++R Y EFTAS I LN E GDGQLD+NLERLR+AVD L+ +LA+ F PK Q +
Sbjct: 453 GSHPHHIVRCYVEFTASLIQLNAECGDGQLDMNLERLRLAVDNLLGRLAENFANPKTQHL 512
Query: 361 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 540
FL+NNYDMTI+VLKEAG E K+Q +FEE L+SN F +ELL+EHF DLIKFV++R SE
Sbjct: 513 FLLNNYDMTISVLKEAGDEANKLQSYFEEKLESNMISFADELLMEHFKDLIKFVRSRVSE 572
Query: 541 DSSLNPERSITIAEVEPLVKDFGSRWKTAIE 633
D L E +IA+VEP+VK+F WKTA+E
Sbjct: 573 DLILYTE-CPSIADVEPIVKNFAVTWKTALE 602
>gb|AAH40114.1| SAC2 suppressor of actin mutations 2-like (yeast) [Homo sapiens]
Length = 717
Score = 136 bits (343), Expect = 2e-31
Identities = 74/212 (34%), Positives = 122/212 (56%), Gaps = 1/212 (0%)
Frame = +1
Query: 1 LMLMIRIIHHHQLIMSRRRIPCLDSYLDKVNISLWPRFKMVFDSHLSSLRDANIKTLWED 180
+ L I I+ + I ++R +P LD Y ++V LWPRF+++ + ++ S+R + + L
Sbjct: 437 VFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSVRSTDPQRLGGL 496
Query: 181 DVHPHYVMRRYAEFTASFIHLNVEYGDGQLDINLERLRMAVDGLILKLAKLFPRPKQQIV 360
D PHY+ RRYAEF+++ + +N + + L +L++ V+ +L++A F K+Q+V
Sbjct: 497 DTRPHYITRRYAEFSSALVSINQTIPNERTMQLLGQLQVEVENFVLRVAAEFSSRKEQLV 556
Query: 361 FLINNYDMTIAVLKEAGPEGGKIQMHFEEMLKSNTSLFVEELLVEHFSDLIKFVKNRASE 540
FLINNYDM + VL E + K F+++L + T F+EELL F L+ FVK +
Sbjct: 557 FLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSPPFGGLVAFVKEAEAL 616
Query: 541 DSSLNPER-SITIAEVEPLVKDFGSRWKTAIE 633
ER A V L++ FGS WK+++E
Sbjct: 617 IERGQAERLRGEEARVTQLIRGFGSSWKSSVE 648
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)