BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV563037.r
(638 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193830.1| translation initiation factor eIF3 - like ... 427 e-119
gb|AAG53638.1|AF291714_1 initiation factor 3d [Arabidopsis ... 427 e-119
gb|AAL38704.1| putative translation initiation factor eIF3 ... 426 e-119
ref|NP_199245.1| eukaryotic translation initiation factor 3... 393 e-108
gb|AAH44692.1| Similar to eukaryotic translation initiation... 236 1e-61
>ref|NP_193830.1| translation initiation factor eIF3 - like protein; protein id:
At4g20980.1, supported by cDNA: gi_17528987 [Arabidopsis
thaliana]|gi|6685535|sp|P56820|IF37_ARATH Eukaryotic
translation initiation factor 3 subunit 7 (eIF-3 zeta)
(eIF3d) (p66)|gi|7486971|pir||T10640 hypothetical
protein T13K14.140 - Arabidopsis
thaliana|gi|5262788|emb|CAB45893.1| translation
initiation factor eIF3-like protein [Arabidopsis
thaliana]|gi|7268895|emb|CAB79098.1| translation
initiation factor eIF3-like protein [Arabidopsis
thaliana]
Length = 591
Score = 427 bits (1097), Expect = e-119
Identities = 211/212 (99%), Positives = 211/212 (99%)
Frame = +1
Query: 1 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 180
DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS
Sbjct: 273 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 332
Query: 181 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 360
AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL
Sbjct: 333 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 392
Query: 361 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 540
VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA
Sbjct: 393 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 452
Query: 541 KWTAQAXLANADMMKIGFVSRVHPRDHFNHVI 636
KWTAQA LANADMMKIGFVSRVHPRDHFNHVI
Sbjct: 453 KWTAQALLANADMMKIGFVSRVHPRDHFNHVI 484
>gb|AAG53638.1|AF291714_1 initiation factor 3d [Arabidopsis thaliana]
Length = 418
Score = 427 bits (1097), Expect = e-119
Identities = 211/212 (99%), Positives = 211/212 (99%)
Frame = +1
Query: 1 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 180
DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS
Sbjct: 100 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 159
Query: 181 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 360
AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL
Sbjct: 160 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 219
Query: 361 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 540
VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA
Sbjct: 220 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 279
Query: 541 KWTAQAXLANADMMKIGFVSRVHPRDHFNHVI 636
KWTAQA LANADMMKIGFVSRVHPRDHFNHVI
Sbjct: 280 KWTAQALLANADMMKIGFVSRVHPRDHFNHVI 311
>gb|AAL38704.1| putative translation initiation factor eIF3 [Arabidopsis thaliana]
Length = 591
Score = 426 bits (1096), Expect = e-119
Identities = 210/212 (99%), Positives = 211/212 (99%)
Frame = +1
Query: 1 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 180
DAILAALMCAPRSVYSWDI+IQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS
Sbjct: 273 DAILAALMCAPRSVYSWDIIIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 332
Query: 181 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 360
AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL
Sbjct: 333 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 392
Query: 361 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 540
VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA
Sbjct: 393 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 452
Query: 541 KWTAQAXLANADMMKIGFVSRVHPRDHFNHVI 636
KWTAQA LANADMMKIGFVSRVHPRDHFNHVI
Sbjct: 453 KWTAQALLANADMMKIGFVSRVHPRDHFNHVI 484
>ref|NP_199245.1| eukaryotic translation initiation factor 3 subunit 7; protein id:
At5g44320.1 [Arabidopsis
thaliana]|gi|10176887|dbj|BAB10117.1| eukaryotic
translation initiation factor 3 subunit 7 [Arabidopsis
thaliana]
Length = 588
Score = 393 bits (1009), Expect = e-108
Identities = 192/212 (90%), Positives = 201/212 (94%)
Frame = +1
Query: 1 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 180
DAILAALMCAPRSVYSWD+VIQRVGNKLFFDKRDGS LDLLSVHETSQEPLPE KDDINS
Sbjct: 268 DAILAALMCAPRSVYSWDLVIQRVGNKLFFDKRDGSPLDLLSVHETSQEPLPEGKDDINS 327
Query: 181 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEGEEIASVAYRYRRWKLDDNMHL 360
AHSLG+EAAYINQNF+QQVLV++GK+ETFDE P NEGEE AS+AYRYRRWKLDD+M+L
Sbjct: 328 AHSLGLEAAYINQNFAQQVLVKNGKRETFDEPIPNVNEGEENASIAYRYRRWKLDDSMYL 387
Query: 361 VARCELQSVADLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNGNKLA 540
VARCELQS DLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLA ELKNNGNKLA
Sbjct: 388 VARCELQSTVDLNNQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLANELKNNGNKLA 447
Query: 541 KWTAQAXLANADMMKIGFVSRVHPRDHFNHVI 636
KWTAQA LANADMMKIGFVSRVHPRDHFNHVI
Sbjct: 448 KWTAQALLANADMMKIGFVSRVHPRDHFNHVI 479
>gb|AAH44692.1| Similar to eukaryotic translation initiation factor 3, subunit 7
(zeta, 66/67 kDa) [Xenopus laevis]
Length = 550
Score = 236 bits (603), Expect = 1e-61
Identities = 121/217 (55%), Positives = 153/217 (69%), Gaps = 5/217 (2%)
Frame = +1
Query: 1 DAILAALMCAPRSVYSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINS 180
DAILA LMC RSV SWDIV+QRVG+K+FFDKRD S DLL+V ET+ EP + + +NS
Sbjct: 252 DAILATLMCCTRSVNSWDIVVQRVGSKIFFDKRDNSDFDLLTVSETANEPPQDEVNSLNS 311
Query: 181 AHSLGVEAAYINQNFSQQVLVRDGKKETFDEANPFANEG---EEIASVAYRYRRWKLDDN 351
+L +EA YIN NFSQQ L +K TF NPF + E+ASVAYRYRRWKL D+
Sbjct: 312 PRNLAMEATYINHNFSQQCLRMGKEKHTFPNPNPFIEDDVDKNEVASVAYRYRRWKLGDD 371
Query: 352 MHLVARCELQSV-ADLNNQRSFLTLNALNEFDPKY-SGVDWRQKLETQRGAVLATELKNN 525
+ LV RCE V N + SF+ + LNE+D KY +GVDWRQKL++QRGAV+ATELKNN
Sbjct: 372 IDLVVRCEHDGVMTGANGEVSFINIKTLNEWDSKYCNGVDWRQKLDSQRGAVIATELKNN 431
Query: 526 GNKLAKWTAQAXLANADMMKIGFVSRVHPRDHFNHVI 636
KLA+WT A LA ++ +K+G+VSR + +D HV+
Sbjct: 432 SYKLARWTCCALLAGSEYLKLGYVSRYNVKDSTRHVV 468
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25491024622
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)