BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV558587.r
         (607 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_565768.1|  expressed protein; protein id: At2g33570.1...   421   e-117
pir||B84747  hypothetical protein At2g33570 [imported] - Ara...   375   e-103
ref|NP_199280.1|  putative protein; protein id: At5g44670.1,...   233   1e-60
ref|NP_193750.1|  putative protein; protein id: At4g20170.1,...   228   3e-59
gb|AAL24253.1|  AT4g20170/F1C12_90 [Arabidopsis thaliana]|gi...   228   3e-59

>ref|NP_565768.1| expressed protein; protein id: At2g33570.1, supported by cDNA:
           119054. [Arabidopsis
           thaliana]|gi|20196847|gb|AAB80674.2| expressed protein
           [Arabidopsis thaliana]|gi|21537058|gb|AAM61399.1|
           unknown [Arabidopsis
           thaliana]|gi|22655220|gb|AAM98200.1| expressed protein
           [Arabidopsis thaliana]
          Length = 496

 Score =  421 bits (1081), Expect = e-117
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = +1

Query: 16  KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS 195
           KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS
Sbjct: 205 KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS 264

Query: 196 HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA 375
           HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA
Sbjct: 265 HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA 324

Query: 376 NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPRQWGFE 555
           NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPRQWGFE
Sbjct: 325 NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPRQWGFE 384

Query: 556 KLLFKDSRTKIRRDRKY 606
           KLLFKDSRTKIRRDRKY
Sbjct: 385 KLLFKDSRTKIRRDRKY 401



>pir||B84747 hypothetical protein At2g33570 [imported] - Arabidopsis thaliana
          Length = 295

 Score =  375 bits (962), Expect = e-103
 Identities = 175/175 (100%), Positives = 175/175 (100%)
 Frame = +1

Query: 16  KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS 195
           KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS
Sbjct: 120 KLFERFTTLEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKS 179

Query: 196 HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA 375
           HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA
Sbjct: 180 HFVFHDAGGVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAA 239

Query: 376 NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPR 540
           NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPR
Sbjct: 240 NWTFFFDVDEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPR 294



>ref|NP_199280.1| putative protein; protein id: At5g44670.1, supported by cDNA:
           gi_13605502 [Arabidopsis
           thaliana]|gi|8953765|dbj|BAA98120.1|
           gene_id:K15C23.12~pir||T05325~strong similarity to
           unknown protein [Arabidopsis
           thaliana]|gi|13605503|gb|AAK32745.1|AF361577_1
           AT5g44670/K15C23_12 [Arabidopsis
           thaliana]|gi|25090160|gb|AAN72243.1| At5g44670/K15C23_12
           [Arabidopsis thaliana]
          Length = 519

 Score =  233 bits (595), Expect = 1e-60
 Identities = 107/181 (59%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +1

Query: 67  ESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKSHFVFHDAGGVSPEVRKV 246
           ES      +YDYLYCGSSLYGN+S  R+REW+AYH  FFG++SHFV HDAGG++ EV +V
Sbjct: 247 ESNLRRREKYDYLYCGSSLYGNLSPQRIREWIAYHVRFFGERSHFVLHDAGGITEEVFEV 306

Query: 247 LEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAANWTFFFDVDEYIYLPHG 426
           L+PWI  GRVTV +IR+Q ++DGYY+NQF++VNDCLHRYR+ A W FFFDVDE+IY+P  
Sbjct: 307 LKPWIELGRVTVHDIREQERFDGYYHNQFMVVNDCLHRYRFMAKWMFFFDVDEFIYVPAK 366

Query: 427 NTLESVLDEFSVNTQFTIEQNPMSSVLCIN-DSSQDYPRQWGFEKLLFKDSRTKIRRDRK 603
           +++ SV+      +QFTIEQ PMSS LC + D      R+WGFEKL ++D +   RRDRK
Sbjct: 367 SSISSVMVSLEEYSQFTIEQMPMSSQLCYDGDGPARTYRKWGFEKLAYRDVKKVPRRDRK 426

Query: 604 Y 606
           Y
Sbjct: 427 Y 427



>ref|NP_193750.1| putative protein; protein id: At4g20170.1, supported by cDNA:
           gi_16604494 [Arabidopsis
           thaliana]|gi|7452443|pir||T05325 hypothetical protein
           F1C12.90 - Arabidopsis
           thaliana|gi|2982434|emb|CAA18242.1| putative protein
           [Arabidopsis thaliana]|gi|7268812|emb|CAB79017.1|
           putative protein [Arabidopsis thaliana]
          Length = 504

 Score =  228 bits (582), Expect = 3e-59
 Identities = 104/184 (56%), Positives = 138/184 (74%), Gaps = 1/184 (0%)
 Frame = +1

Query: 58  IYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKSHFVFHDAGGVSPEV 237
           +Y+ +K +   +YDYLYCGSSLYGN+S  R+REW+AYH  FFG++SHFV HDAGG+  EV
Sbjct: 231 LYNSTKKTK--KYDYLYCGSSLYGNLSPQRVREWIAYHVRFFGERSHFVLHDAGGIHEEV 288

Query: 238 RKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAANWTFFFDVDEYIYL 417
            +VL+PWI  GRVT+ +IRDQ ++DGYY+NQF+IVNDCLHRYR+   W FFFDVDE++++
Sbjct: 289 FEVLKPWIELGRVTLHDIRDQERFDGYYHNQFMIVNDCLHRYRFMTKWMFFFDVDEFLHV 348

Query: 418 PHGNTLESVLDEFSVNTQFTIEQNPMSSVLCIN-DSSQDYPRQWGFEKLLFKDSRTKIRR 594
           P   T+ SV++     +QFTIEQ PMSS +C + D      R+WG EKL ++D +   RR
Sbjct: 349 PVKETISSVMESLEEYSQFTIEQMPMSSRICYSGDGPARTYRKWGIEKLAYRDVKKVPRR 408

Query: 595 DRKY 606
           DRKY
Sbjct: 409 DRKY 412



>gb|AAL24253.1| AT4g20170/F1C12_90 [Arabidopsis
           thaliana]|gi|23308339|gb|AAN18139.1| At4g20170/F1C12_90
           [Arabidopsis thaliana]
          Length = 388

 Score =  228 bits (582), Expect = 3e-59
 Identities = 104/184 (56%), Positives = 138/184 (74%), Gaps = 1/184 (0%)
 Frame = +1

Query: 58  IYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKSHFVFHDAGGVSPEV 237
           +Y+ +K +   +YDYLYCGSSLYGN+S  R+REW+AYH  FFG++SHFV HDAGG+  EV
Sbjct: 115 LYNSTKKTK--KYDYLYCGSSLYGNLSPQRVREWIAYHVRFFGERSHFVLHDAGGIHEEV 172

Query: 238 RKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAANWTFFFDVDEYIYL 417
            +VL+PWI  GRVT+ +IRDQ ++DGYY+NQF+IVNDCLHRYR+   W FFFDVDE++++
Sbjct: 173 FEVLKPWIELGRVTLHDIRDQERFDGYYHNQFMIVNDCLHRYRFMTKWMFFFDVDEFLHV 232

Query: 418 PHGNTLESVLDEFSVNTQFTIEQNPMSSVLCIN-DSSQDYPRQWGFEKLLFKDSRTKIRR 594
           P   T+ SV++     +QFTIEQ PMSS +C + D      R+WG EKL ++D +   RR
Sbjct: 233 PVKETISSVMESLEEYSQFTIEQMPMSSRICYSGDGPARTYRKWGIEKLAYRDVKKVPRR 292

Query: 595 DRKY 606
           DRKY
Sbjct: 293 DRKY 296



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 22891693356
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results