BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV540856.r
(637 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA50234.1| nucleosome assembly protein I-like protein; ... 423 e-118
ref|NP_194341.1| nucleosome assembly protein I-like protein... 404 e-112
dbj|BAA97025.1| nucleosome assembly protein [Arabidopsis th... 355 2e-97
ref|NP_568844.1| nucleosome assembly protein; protein id: A... 355 2e-97
ref|NP_179538.1| putative nucleosome assembly protein; prot... 324 5e-88
>gb|AAA50234.1| nucleosome assembly protein I-like protein; similar to mouse nap I,
PIR Accession Number JS0707
Length = 382
Score = 423 bits (1088), Expect = e-118
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +3
Query: 3 KSLSSPNPQKMSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPN 182
KSLSSPNPQKMSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPN
Sbjct: 1 KSLSSPNPQKMSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPN 60
Query: 183 VRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPED 362
VRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPED
Sbjct: 61 VRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPED 120
Query: 363 DTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGF 542
DTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGF
Sbjct: 121 DTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGF 180
Query: 543 KLEFFFDTNPYFKNTVLTKSYHMIDEDEPLL 635
KLEFFFDTNPYFKNTVLTKSYHMIDEDEPLL
Sbjct: 181 KLEFFFDTNPYFKNTVLTKSYHMIDEDEPLL 211
>ref|NP_194341.1| nucleosome assembly protein I-like protein; protein id:
At4g26110.1, supported by cDNA: gi_15450807, supported
by cDNA: gi_20259869 [Arabidopsis
thaliana]|gi|7485834|pir||T04266 hypothetical protein
F20B18.220 - Arabidopsis
thaliana|gi|4538940|emb|CAB39676.1| nucleosome assembly
protein I-like protein [Arabidopsis
thaliana]|gi|7269462|emb|CAB79466.1| nucleosome assembly
protein I-like protein [Arabidopsis
thaliana]|gi|15450808|gb|AAK96675.1| nucleosome assembly
protein I-like protein [Arabidopsis
thaliana]|gi|20259870|gb|AAM13282.1| nucleosome assembly
protein I-like protein [Arabidopsis thaliana]
Length = 372
Score = 404 bits (1037), Expect = e-112
Identities = 201/201 (100%), Positives = 201/201 (100%)
Frame = +3
Query: 33 MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD 212
MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD
Sbjct: 1 MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD 60
Query: 213 IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK 392
IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK
Sbjct: 61 IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK 120
Query: 393 TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP 572
TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP
Sbjct: 121 TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP 180
Query: 573 YFKNTVLTKSYHMIDEDEPLL 635
YFKNTVLTKSYHMIDEDEPLL
Sbjct: 181 YFKNTVLTKSYHMIDEDEPLL 201
>dbj|BAA97025.1| nucleosome assembly protein [Arabidopsis thaliana]
Length = 374
Score = 355 bits (912), Expect = 2e-97
Identities = 175/201 (87%), Positives = 187/201 (92%)
Frame = +3
Query: 33 MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD 212
MSNDKDSFNVSDLT+ALKDEDRAGLVNALKNKLQNLAGQ SDVLENLTP +R+RV+ LR+
Sbjct: 1 MSNDKDSFNVSDLTSALKDEDRAGLVNALKNKLQNLAGQHSDVLENLTPKIRRRVEVLRE 60
Query: 213 IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK 392
IQ +HDE+E KFREERA LEAKYQ LYQPLY KRYEIVNG TEVE APE D K+DQG+EK
Sbjct: 61 IQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATEVEGAPE-DAKMDQGDEK 119
Query: 393 TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP 572
TAEEKGVPSFWLTALKNNDVISEE+TERDEGAL YLKDIKWCKIEEPKGFKLEFFFD NP
Sbjct: 120 TAEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNP 179
Query: 573 YFKNTVLTKSYHMIDEDEPLL 635
YFKNT+LTK+YHMIDEDEPLL
Sbjct: 180 YFKNTLLTKAYHMIDEDEPLL 200
>ref|NP_568844.1| nucleosome assembly protein; protein id: At5g56950.1, supported by
cDNA: gi_13877572, supported by cDNA: gi_17978720
[Arabidopsis
thaliana]|gi|13877573|gb|AAK43864.1|AF370487_1
nucleosome assembly protein [Arabidopsis
thaliana]|gi|17978721|gb|AAL47354.1| nucleosome assembly
protein [Arabidopsis thaliana]
Length = 374
Score = 355 bits (912), Expect = 2e-97
Identities = 175/201 (87%), Positives = 187/201 (92%)
Frame = +3
Query: 33 MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD 212
MSNDKDSFNVSDLT+ALKDEDRAGLVNALKNKLQNLAGQ SDVLENLTP +R+RV+ LR+
Sbjct: 1 MSNDKDSFNVSDLTSALKDEDRAGLVNALKNKLQNLAGQHSDVLENLTPKIRRRVEVLRE 60
Query: 213 IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK 392
IQ +HDE+E KFREERA LEAKYQ LYQPLY KRYEIVNG TEVE APE D K+DQG+EK
Sbjct: 61 IQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATEVEGAPE-DAKMDQGDEK 119
Query: 393 TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP 572
TAEEKGVPSFWLTALKNNDVISEE+TERDEGAL YLKDIKWCKIEEPKGFKLEFFFD NP
Sbjct: 120 TAEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNP 179
Query: 573 YFKNTVLTKSYHMIDEDEPLL 635
YFKNT+LTK+YHMIDEDEPLL
Sbjct: 180 YFKNTLLTKAYHMIDEDEPLL 200
>ref|NP_179538.1| putative nucleosome assembly protein; protein id: At2g19480.1,
supported by cDNA: gi_20466609 [Arabidopsis
thaliana]|gi|25411910|pir||C84577 probable nucleosome
assembly protein [imported] - Arabidopsis
thaliana|gi|4191778|gb|AAD10147.1| putative nucleosome
assembly protein [Arabidopsis
thaliana]|gi|20466610|gb|AAM20622.1| putative nucleosome
assembly protein [Arabidopsis
thaliana]|gi|27311993|gb|AAO00962.1| putative nucleosome
assembly protein [Arabidopsis thaliana]
Length = 379
Score = 324 bits (831), Expect = 5e-88
Identities = 159/201 (79%), Positives = 179/201 (88%)
Frame = +3
Query: 33 MSNDKDSFNVSDLTAALKDEDRAGLVNALKNKLQNLAGQRSDVLENLTPNVRKRVDALRD 212
MSNDKDS N+SDL+ AL +EDRAGLVNALKNKLQNLAGQ SDVLENLTP VRKRV+ LR+
Sbjct: 1 MSNDKDSMNMSDLSTALNEEDRAGLVNALKNKLQNLAGQHSDVLENLTPPVRKRVEFLRE 60
Query: 213 IQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEK 392
IQ+Q+DE+EAKF EERA LEAKYQ LYQPLY KRYEIVNG EVE A E + K +QGE+K
Sbjct: 61 IQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVNGVVEVEGAAE-EVKSEQGEDK 119
Query: 393 TAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFFFDTNP 572
+AEEKGVP FWL ALKNN++ +EE+TERDEGALKYLKDIKW ++EEPKGFKLEFFFD NP
Sbjct: 120 SAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNP 179
Query: 573 YFKNTVLTKSYHMIDEDEPLL 635
YFKNTVLTK+YHMIDEDEP+L
Sbjct: 180 YFKNTVLTKTYHMIDEDEPIL 200
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)