BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AV538951.r (635 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL90901.1|  AT5g20250/F5O24_140 [Arabidopsis thaliana]|g...   437   e-122
ref|NP_197525.1|  glycosyl hydrolase family 36; protein id: ...   437   e-122
gb|AAK92707.1|  putative imbibition protein homolog [Arabido...   309   2e-83
ref|NP_191311.1|  glycosyl hydrolase family 36; protein id: ...   309   2e-83
pir||S45033  probable imbibition protein - wild cabbage|gi|4...   306   1e-82

>gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana]|gi|23308457|gb|AAN18198.1|
            At5g20250/F5O24_140 [Arabidopsis thaliana]
          Length = 844

 Score =  437 bits (1125), Expect = e-122
 Identities = 211/211 (100%), Positives = 211/211 (100%)
 Frame = +3

Query: 3    CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA 182
            CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA
Sbjct: 530  CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA 589

Query: 183  RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI 362
            RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI
Sbjct: 590  RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI 649

Query: 363  WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN 542
            WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN
Sbjct: 650  WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN 709

Query: 543  GDCAVYSQSRGELIVMPYNVSLPVSLKIREH 635
            GDCAVYSQSRGELIVMPYNVSLPVSLKIREH
Sbjct: 710  GDCAVYSQSRGELIVMPYNVSLPVSLKIREH 740

>ref|NP_197525.1| glycosyl hydrolase family 36; protein id: At5g20250.1 [Arabidopsis
            thaliana]
          Length = 749

 Score =  437 bits (1125), Expect = e-122
 Identities = 211/211 (100%), Positives = 211/211 (100%)
 Frame = +3

Query: 3    CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA 182
            CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA
Sbjct: 435  CSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASA 494

Query: 183  RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI 362
            RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI
Sbjct: 495  RAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKI 554

Query: 363  WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN 542
            WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN
Sbjct: 555  WNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWN 614

Query: 543  GDCAVYSQSRGELIVMPYNVSLPVSLKIREH 635
            GDCAVYSQSRGELIVMPYNVSLPVSLKIREH
Sbjct: 615  GDCAVYSQSRGELIVMPYNVSLPVSLKIREH 645

>gb|AAK92707.1| putative imbibition protein homolog [Arabidopsis thaliana]
          Length = 773

 Score =  309 bits (791), Expect = 2e-83
 Identities = 140/210 (66%), Positives = 171/210 (80%)
 Frame = +3

Query: 6    SKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASAR 185
            +KQ A++RASDDFYPRDP SHTIHIASVAYNS+FLGEFMQPDWDMFHS+HP AEYHA+AR
Sbjct: 438  AKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAAR 497

Query: 186  AISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKIW 365
            A+ G  +YVSD PG HNF+LLRKLVLPDGS+LRA+LPGRPTRDCLFADPARDG+SLLKIW
Sbjct: 498  AVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGISLLKIW 557

Query: 366  NMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNG 545
            NMNK+TG++GV+NCQGA W    +KN  H T   +LTGSIR  D   IS+ + +   W+G
Sbjct: 558  NMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGE--DWSG 615

Query: 546  DCAVYSQSRGELIVMPYNVSLPVSLKIREH 635
            D  VY+   GE++ +P   S+P++LK+ E+
Sbjct: 616  DSIVYAYRSGEVVRLPKGASIPLTLKVLEY 645

>ref|NP_191311.1| glycosyl hydrolase family 36; protein id: At3g57520.1, supported by
            cDNA: gi_15292676 [Arabidopsis
            thaliana]|gi|11281925|pir||T46188 imbibition protein
            homolog - Arabidopsis thaliana|gi|6706423|emb|CAB66109.1|
            imbibition protein homolog [Arabidopsis thaliana]
          Length = 773

 Score =  309 bits (791), Expect = 2e-83
 Identities = 140/210 (66%), Positives = 171/210 (80%)
 Frame = +3

Query: 6    SKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASAR 185
            +KQ A++RASDDFYPRDP SHTIHIASVAYNS+FLGEFMQPDWDMFHS+HP AEYHA+AR
Sbjct: 438  AKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAAR 497

Query: 186  AISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKIW 365
            A+ G  +YVSD PG HNF+LLRKLVLPDGS+LRA+LPGRPTRDCLFADPARDG+SLLKIW
Sbjct: 498  AVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGISLLKIW 557

Query: 366  NMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNG 545
            NMNK+TG++GV+NCQGA W    +KN  H T   +LTGSIR  D   IS+ + +   W+G
Sbjct: 558  NMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGE--DWSG 615

Query: 546  DCAVYSQSRGELIVMPYNVSLPVSLKIREH 635
            D  VY+   GE++ +P   S+P++LK+ E+
Sbjct: 616  DSIVYAYRSGEVVRLPKGASIPLTLKVLEY 645

>pir||S45033 probable imbibition protein - wild cabbage|gi|488787|emb|CAA55893.1|
            putative imbibition protein [Brassica oleracea]
          Length = 765

 Score =  306 bits (784), Expect = 1e-82
 Identities = 139/210 (66%), Positives = 167/210 (79%)
 Frame = +3

Query: 6    SKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASAR 185
            +KQ A++RASDD+YPRDP SHTIHIASVAYN++FLGEFMQPDWDMFHS+HP AEYHA+AR
Sbjct: 436  AKQTAIVRASDDYYPRDPASHTIHIASVAYNTLFLGEFMQPDWDMFHSLHPTAEYHAAAR 495

Query: 186  AISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKIW 365
            A+ G  +YVSD PG HNF+LLRKLVLPDGS+LRARLPGRPTRDCLFADPARDG SLLKIW
Sbjct: 496  AVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRARLPGRPTRDCLFADPARDGTSLLKIW 555

Query: 366  NMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNG 545
            NMNK+TG++GV+NCQGA W    +KN  H T   +LTG +R  D   ISE +     W G
Sbjct: 556  NMNKFTGIVGVFNCQGAGWCKDTKKNRIHDTSPGTLTGLVRAEDADLISEVAGQ--DWGG 613

Query: 546  DCAVYSQSRGELIVMPYNVSLPVSLKIREH 635
            D  VY+   GEL+ +P   S+P++LK+ E+
Sbjct: 614  DSIVYAYKSGELVRLPKGASIPLTLKVLEY 643

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results