BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV538468.r
(637 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200125.1| cyclic nucleotide-regulated ion channel (C... 439 e-122
gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin... 350 9e-96
gb|AAN65366.1| cyclic nucleotide-gated channel C [Phaseolus... 298 5e-80
gb|AAD19610.1| cyclic nucleotide gated channel [Arabidopsis... 289 2e-77
ref|NP_566075.1| cyclic nucleotide-regulated ion channel (C... 287 7e-77
>ref|NP_200125.1| cyclic nucleotide-regulated ion channel (CNGC1); protein id:
At5g53130.1, supported by cDNA: gi_13877752 [Arabidopsis
thaliana]|gi|11357236|pir||T51354 cyclic
nucleotide-regulated ion channel 1 [validated] -
Arabidopsis thaliana|gi|3096947|emb|CAA76178.1| putative
cyclic nucleotide-regulated ion channel [Arabidopsis
thaliana]|gi|9757994|dbj|BAB08416.1| cyclic
nucleotide-regulated ion channel [Arabidopsis
thaliana]|gi|13877753|gb|AAK43954.1|AF370139_1 putative
cyclic nucleotide-regulated ion channel protein
[Arabidopsis thaliana]|gi|24030485|gb|AAN41391.1|
putative cyclic nucleotide-regulated ion channel protein
[Arabidopsis thaliana]
Length = 716
Score = 439 bits (1130), Expect = e-122
Identities = 211/212 (99%), Positives = 211/212 (99%)
Frame = +1
Query: 1 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 180
LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA
Sbjct: 198 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 257
Query: 181 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF 360
GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF
Sbjct: 258 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF 317
Query: 361 LNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTST 540
LNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTST
Sbjct: 318 LNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTST 377
Query: 541 YIWEICFAVFISIAGLGLFSFLIGNMQTYLQS 636
YIWEICFAVFISIAGL LFSFLIGNMQTYLQS
Sbjct: 378 YIWEICFAVFISIAGLVLFSFLIGNMQTYLQS 409
>gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana
tabacum]
Length = 708
Score = 350 bits (898), Expect = 9e-96
Identities = 169/212 (79%), Positives = 183/212 (85%)
Frame = +1
Query: 1 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 180
LPQ+VILIIIP +RGS SLNTKN+LK +VFFQYIPR +R+YPLY+EVTRTSGILTETAWA
Sbjct: 192 LPQVVILIIIPKLRGSRSLNTKNLLKSVVFFQYIPRVLRVYPLYREVTRTSGILTETAWA 251
Query: 181 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF 360
GAAFNLFLYMLASHV GAFWYLFSIERET CWKQAC N+ PC LYCD +
Sbjct: 252 GAAFNLFLYMLASHVLGAFWYLFSIERETTCWKQACG-NSSPCHHASLYCDDDHTKFKTL 310
Query: 361 LNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTST 540
LN SCPI+TPN TLFDFGIFL ALQSGVV DFPQKFFYCFWWGLQNLSSLGQNL+TST
Sbjct: 311 LNSSCPIETPNATLFDFGIFLGALQSGVVGPMDFPQKFFYCFWWGLQNLSSLGQNLQTST 370
Query: 541 YIWEICFAVFISIAGLGLFSFLIGNMQTYLQS 636
+IWE+CFAVFISIAGL LF+FLIGNMQT LQS
Sbjct: 371 FIWEMCFAVFISIAGLVLFAFLIGNMQTCLQS 402
>gb|AAN65366.1| cyclic nucleotide-gated channel C [Phaseolus vulgaris]
Length = 566
Score = 298 bits (762), Expect = 5e-80
Identities = 147/215 (68%), Positives = 168/215 (77%), Gaps = 3/215 (1%)
Frame = +1
Query: 1 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 180
LPQ+VIL+IIP M G SLNTKN+LKF+VFFQY+PR +R+ PLY+EVTR SGILTETAWA
Sbjct: 47 LPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRVIPLYREVTRASGILTETAWA 106
Query: 181 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAG---G 351
GAAFNLFLYMLASHV GAFWYLFSIERET CW++AC N C +YC+ G
Sbjct: 107 GAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGLSKI 166
Query: 352 NAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLK 531
+ FLN SCPIQ + LFDFG+FLDALQSGVVES+DFPQKFFYCFWWGL+NLSSLGQNL
Sbjct: 167 STFLNTSCPIQKEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLG 226
Query: 532 TSTYIWEICFAVFISIAGLGLFSFLIGNMQTYLQS 636
TS + F + + +FSFLIGNMQTYLQS
Sbjct: 227 TSPMFGKYALQ-FSFLYLVWVFSFLIGNMQTYLQS 260
>gb|AAD19610.1| cyclic nucleotide gated channel [Arabidopsis thaliana]
Length = 707
Score = 289 bits (740), Expect = 2e-77
Identities = 139/216 (64%), Positives = 170/216 (78%), Gaps = 4/216 (1%)
Frame = +1
Query: 1 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 180
+PQ+V+L I+P MR +SL K +LK+++F QY+PR RIYPL+KEVTRTSG++TETAWA
Sbjct: 186 IPQVVVLAIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWA 245
Query: 181 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF 360
GAA NLFLYMLASHVFG+FWYL SIER+ CW++AC N C + LYC P F
Sbjct: 246 GAALNLFLYMLASHVFGSFWYLISIERKDRCWREAC-ANIQDCSHEKLYCSPTGEDNRLF 304
Query: 361 LNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNL 528
LN SCP+ P N+T+F+FGIF DALQSGVVES+DFP+KFFYCFWWGL+NLS+LGQNL
Sbjct: 305 LNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNL 364
Query: 529 KTSTYIWEICFAVFISIAGLGLFSFLIGNMQTYLQS 636
KTS++ EI FA+ I I+GL LF+ LIGNMQ YLQS
Sbjct: 365 KTSSFEGEIIFAIVICISGLVLFALLIGNMQKYLQS 400
>ref|NP_566075.1| cyclic nucleotide-regulated ion channel (CNGC3); protein id:
At2g46430.1, supported by cDNA: gi_16648780, supported
by cDNA: gi_4378658 [Arabidopsis
thaliana]|gi|4581201|emb|CAB40128.1| cyclic nucleotide
and calmodulin-regulated ion channel [Arabidopsis
thaliana]|gi|16648781|gb|AAL25581.1| At2g46430/F11C10.12
[Arabidopsis thaliana]|gi|20197826|gb|AAD23045.2|
putative cyclic nucleotide-regulated ion channel protein
[Arabidopsis thaliana]
Length = 706
Score = 287 bits (735), Expect = 7e-77
Identities = 138/216 (63%), Positives = 168/216 (76%), Gaps = 4/216 (1%)
Frame = +1
Query: 1 LPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWA 180
+PQ+V+L I+P MR +SL K +LK+++F QY+PR RIYPL+KEVTRTSG++TETAWA
Sbjct: 186 IPQVVVLAIVPRMRRPASLVAKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWA 245
Query: 181 GAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAF 360
GAA NLFLYMLASHVFG+FWYL SIER+ CW++AC + C LYC P F
Sbjct: 246 GAALNLFLYMLASHVFGSFWYLISIERKDRCWREACAKIQ-NCTHAYLYCSPTGEDNRLF 304
Query: 361 LNESCPIQTP----NTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNL 528
LN SCP+ P N+T+F+FGIF DALQSGVVES+DFP+KFFYCFWWGL+NLS+LGQNL
Sbjct: 305 LNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNL 364
Query: 529 KTSTYIWEICFAVFISIAGLGLFSFLIGNMQTYLQS 636
KTS + EI FA+ I I+GL LF+ LIGNMQ YLQS
Sbjct: 365 KTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQS 400
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)