BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV533309.r
         (633 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK44091.1|AF370276_1  unknown protein [Arabidopsis thali...   425   e-118
gb|AAF26168.1|AC008261_25  unknown protin [Arabidopsis thali...   425   e-118
ref|NP_566129.1|  unknown protin; protein id: At3g01060.1, s...   425   e-118
gb|AAM65195.1|  unknown [Arabidopsis thaliana]                    424   e-118
ref|NP_486453.1|  hypothetical protein [Nostoc sp. PCC 7120]...   186   2e-46

>gb|AAK44091.1|AF370276_1 unknown protein [Arabidopsis thaliana]
          Length = 450

 Score =  425 bits (1093), Expect = e-118
 Identities = 209/210 (99%), Positives = 210/210 (99%)
 Frame = +3

Query: 3   GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 182
           GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC
Sbjct: 82  GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 141

Query: 183 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 362
           VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF
Sbjct: 142 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 201

Query: 363 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 542
           RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP
Sbjct: 202 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 261

Query: 543 SSISNESLLASAKNGLALKILSKGKDIPND 632
           SSISNESLLASAKNGLA+KILSKGKDIPND
Sbjct: 262 SSISNESLLASAKNGLAVKILSKGKDIPND 291



>gb|AAF26168.1|AC008261_25 unknown protin [Arabidopsis thaliana]
          Length = 449

 Score =  425 bits (1093), Expect = e-118
 Identities = 209/210 (99%), Positives = 210/210 (99%)
 Frame = +3

Query: 3   GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 182
           GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC
Sbjct: 81  GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 140

Query: 183 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 362
           VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF
Sbjct: 141 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 200

Query: 363 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 542
           RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP
Sbjct: 201 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 260

Query: 543 SSISNESLLASAKNGLALKILSKGKDIPND 632
           SSISNESLLASAKNGLA+KILSKGKDIPND
Sbjct: 261 SSISNESLLASAKNGLAVKILSKGKDIPND 290



>ref|NP_566129.1| unknown protin; protein id: At3g01060.1, supported by cDNA: 37425.,
           supported by cDNA: gi_20260329 [Arabidopsis
           thaliana]|gi|20260330|gb|AAM13063.1| unknown protein
           [Arabidopsis thaliana]
          Length = 455

 Score =  425 bits (1093), Expect = e-118
 Identities = 209/210 (99%), Positives = 210/210 (99%)
 Frame = +3

Query: 3   GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 182
           GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC
Sbjct: 87  GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 146

Query: 183 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 362
           VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF
Sbjct: 147 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 206

Query: 363 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 542
           RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP
Sbjct: 207 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 266

Query: 543 SSISNESLLASAKNGLALKILSKGKDIPND 632
           SSISNESLLASAKNGLA+KILSKGKDIPND
Sbjct: 267 SSISNESLLASAKNGLAVKILSKGKDIPND 296



>gb|AAM65195.1| unknown [Arabidopsis thaliana]
          Length = 455

 Score =  424 bits (1089), Expect = e-118
 Identities = 208/210 (99%), Positives = 209/210 (99%)
 Frame = +3

Query: 3   GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC 182
           GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMT IKLKSGGLWVHAPIAPTKEC
Sbjct: 87  GPFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTAIKLKSGGLWVHAPIAPTKEC 146

Query: 183 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 362
           VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF
Sbjct: 147 VQLIKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIF 206

Query: 363 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 542
           RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP
Sbjct: 207 RAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPP 266

Query: 543 SSISNESLLASAKNGLALKILSKGKDIPND 632
           SSISNESLLASAKNGLA+KILSKGKDIPND
Sbjct: 267 SSISNESLLASAKNGLAVKILSKGKDIPND 296



>ref|NP_486453.1| hypothetical protein [Nostoc sp. PCC 7120]|gi|25333555|pir||AF2107
           hypothetical protein all2413 [imported] - Nostoc sp.
           (strain PCC 7120)|gi|17131505|dbj|BAB74112.1|
           ORF_ID:all2413~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 400

 Score =  186 bits (472), Expect = 2e-46
 Identities = 101/191 (52%), Positives = 135/191 (69%), Gaps = 6/191 (3%)
 Frame = +3

Query: 6   PFLNRRTIRTEAVKGCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECV 185
           P+  RRT+  E VK  IW F+Q Q + ++ V   IRMTVIKL +GGL ++AP+APTKECV
Sbjct: 27  PYGRRRTLCREVVKDTIWTFDQVQGILYTVVP--IRMTVIKLNAGGLLIYAPVAPTKECV 84

Query: 186 QLIKELGAP---VEYIVLPTFA-YEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFF 353
           +L+ EL A    V+YI+LPT +  EHKIFVGPF+RKFP+AQV+VAP QWS+P NLPL + 
Sbjct: 85  RLVNELVAQHGEVKYIILPTSSGLEHKIFVGPFARKFPQAQVFVAPHQWSFPFNLPLSWL 144

Query: 354 GI--FRAKIIKDRDLSTPWAEEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFV 527
           G    R +++ +    TP+A+E +  VL    +G G +VEVAF H+RS TLLVTDAV+ V
Sbjct: 145 GFPQNRTQVLPEDSSQTPFADEFDYAVLDI-NLGRGSFVEVAFLHRRSHTLLVTDAVLSV 203

Query: 528 PRKPPSSISNE 560
           P +PP+ +  E
Sbjct: 204 PAEPPAILELE 214



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 24948662396
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)