BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV518051.r
(619 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174901.1| nitrate reductase, putative; protein id: A... 440 e-123
gb|AAK59616.1| putative nitrate reductase [Arabidopsis thal... 438 e-122
sp|P39867|NIA1_BRANA Nitrate reductase [NADH], clone PBNBR1... 402 e-111
sp|P36859|NIA_PETHY Nitrate reductase [NADH] (NR)|gi|484422... 401 e-111
sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 (NR1)|gi|19... 395 e-109
>ref|NP_174901.1| nitrate reductase, putative; protein id: At1g37130.1, supported by
cDNA: gi_14194132, supported by cDNA: gi_14334875,
supported by cDNA: gi_14335007, supported by cDNA:
gi_14532579, supported by cDNA: gi_166781, supported by
cDNA: gi_16930702 [Arabidopsis
thaliana]|gi|128188|sp|P11035|NIA2_ARATH Nitrate
reductase [NADH] 2 (NR2)|gi|66202|pir||RDMUNH nitrate
reductase (NADH) (EC 1.7.1.1) 2 - Arabidopsis
thaliana|gi|166782|gb|AAA32830.1| nitrate reductase (EC
1.6.6.1)|gi|6623972|gb|AAF19225.1|AC007505_1 nitrate
reductase [Arabidopsis
thaliana]|gi|14194133|gb|AAK56261.1|AF367272_1
At1g37130/F28L22_2 [Arabidopsis
thaliana]|gi|14335008|gb|AAK59768.1| At1g37130/F28L22_2
[Arabidopsis thaliana]|gi|14532580|gb|AAK64018.1|
putative nitrate reductase [Arabidopsis
thaliana]|gi|16930703|gb|AAL32017.1|AF436835_1
At1g37130/F28L22_2 [Arabidopsis
thaliana]|gi|22137030|gb|AAM91360.1| At1g37130/F28L22_2
[Arabidopsis thaliana]|gi|23296643|gb|AAN13137.1|
putative nitrate reductase [Arabidopsis thaliana]
Length = 917
Score = 440 bits (1132), Expect = e-123
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 6 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 185
NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG
Sbjct: 415 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 474
Query: 186 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 365
MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS
Sbjct: 475 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 534
Query: 366 TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 545
TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE
Sbjct: 535 TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 594
Query: 546 EFEAIHSDKAKKMLEDYRIGELIT 617
EFEAIHSDKAKKMLEDYRIGELIT
Sbjct: 595 EFEAIHSDKAKKMLEDYRIGELIT 618
>gb|AAK59616.1| putative nitrate reductase [Arabidopsis thaliana]
Length = 917
Score = 438 bits (1126), Expect = e-122
Identities = 203/204 (99%), Positives = 203/204 (99%)
Frame = +3
Query: 6 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 185
NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG
Sbjct: 415 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 474
Query: 186 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 365
MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS
Sbjct: 475 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 534
Query: 366 TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 545
TPFMNTTAKMYSM EVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE
Sbjct: 535 TPFMNTTAKMYSMYEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 594
Query: 546 EFEAIHSDKAKKMLEDYRIGELIT 617
EFEAIHSDKAKKMLEDYRIGELIT
Sbjct: 595 EFEAIHSDKAKKMLEDYRIGELIT 618
>sp|P39867|NIA1_BRANA Nitrate reductase [NADH], clone PBNBR1405 (NR)|gi|7432649|pir||T08105
nitrate reductase (EC 1.7.1.-) 1 -
rape|gi|540485|dbj|BAA07394.1| nitrate reductase
[Brassica napus]
Length = 911
Score = 402 bits (1033), Expect = e-111
Identities = 180/204 (88%), Positives = 197/204 (96%)
Frame = +3
Query: 6 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 185
+VC LDHQEKPNKYGKFWCWCFWSL+VEVLDLLSAKE+AVRAWDE+LNTQPEK+IWNLMG
Sbjct: 412 SVCELDHQEKPNKYGKFWCWCFWSLDVEVLDLLSAKEVAVRAWDESLNTQPEKLIWNLMG 471
Query: 186 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 365
MMNNCWFR+KTNVCKPH+GEIGIVFEHPT PGN+SGGWMAKER +EKS+++ P+LKKSVS
Sbjct: 472 MMNNCWFRIKTNVCKPHRGEIGIVFEHPTRPGNQSGGWMAKERQIEKSSESHPTLKKSVS 531
Query: 366 TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 545
TPFMNT +KMYSMSEV+KHNSA+S WIIVHGHIYDCTRFL DHPGGSDSILINAGTDCTE
Sbjct: 532 TPFMNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTE 591
Query: 546 EFEAIHSDKAKKMLEDYRIGELIT 617
EFEAIHSDKAKK+LEDYRIGELIT
Sbjct: 592 EFEAIHSDKAKKLLEDYRIGELIT 615
>sp|P36859|NIA_PETHY Nitrate reductase [NADH] (NR)|gi|484422|pir||JN0665 nitrate reductase
(NADH) (EC 1.7.1.1) - petunia|gi|294114|gb|AAA33713.1|
nitrate reductase
Length = 909
Score = 401 bits (1031), Expect = e-111
Identities = 182/204 (89%), Positives = 194/204 (94%)
Frame = +3
Query: 6 NVCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMG 185
NVC +DH EKPNKYGK+WCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEK+IWN+MG
Sbjct: 408 NVCTVDHPEKPNKYGKYWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKLIWNVMG 467
Query: 186 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVS 365
MMNNCWFRVKTNVCKPHKGEIGIVFEHPT PGN SGGWMAKERHLE SA+APP+LKKS+S
Sbjct: 468 MMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNLSGGWMAKERHLEISAEAPPTLKKSIS 527
Query: 366 TPFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTE 545
TPFMNT +KMYSMSEVKKHNSADS WIIVHGH+YD TRFL DHPGG DSILINAGTDCTE
Sbjct: 528 TPFMNTASKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTE 587
Query: 546 EFEAIHSDKAKKMLEDYRIGELIT 617
EF+AIHSDKAKK+LED+RIGELIT
Sbjct: 588 EFDAIHSDKAKKLLEDFRIGELIT 611
>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 (NR1)|gi|19889|emb|CAA32216.1| nitrate
reductase [Nicotiana tabacum]
Length = 904
Score = 395 bits (1014), Expect = e-109
Identities = 178/203 (87%), Positives = 193/203 (94%)
Frame = +3
Query: 9 VCALDHQEKPNKYGKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKMIWNLMGM 188
VC LDH EKP KYGK+WCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEK+IWN+MGM
Sbjct: 405 VCTLDHPEKPTKYGKYWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKLIWNVMGM 464
Query: 189 MNNCWFRVKTNVCKPHKGEIGIVFEHPTLPGNESGGWMAKERHLEKSADAPPSLKKSVST 368
MNNCWFRVK NVCKPHKGEIGIVFEHPT PGN+SGGWMAKERHLE SA+APP+LKKS+ST
Sbjct: 465 MNNCWFRVKMNVCKPHKGEIGIVFEHPTQPGNQSGGWMAKERHLEISAEAPPTLKKSIST 524
Query: 369 PFMNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEE 548
PFMNT +KMYSMSEV+KH+SADS WIIVHGHIYD TRFL DHPGGSDSILINAGTDCTEE
Sbjct: 525 PFMNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEE 584
Query: 549 FEAIHSDKAKKMLEDYRIGELIT 617
F+AIHSDKAKK+LE++RIGEL+T
Sbjct: 585 FDAIHSDKAKKLLEEFRIGELLT 607
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 23981773992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)