BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AV439562.r (632 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM19831.1|  AT4g10060/T5L19_190 [Arabidopsis thaliana]|g...   434   e-121
ref|NP_192744.2|  putative protein; protein id: At4g10060.1,...   409   e-113
pir||T04010  hypothetical protein T5L19.190 - Arabidopsis th...   343   8e-94
ref|NP_174631.1|  hypothetical protein; protein id: At1g3370...   322   2e-87
gb|AAO42222.1|  unknown protein [Arabidopsis thaliana]            320   1e-86

>gb|AAM19831.1| AT4g10060/T5L19_190 [Arabidopsis thaliana]|gi|24111431|gb|AAN46866.1|
            At4g10060/T5L19_190 [Arabidopsis thaliana]
          Length = 922

 Score =  434 bits (1115), Expect = e-121
 Identities = 209/210 (99%), Positives = 209/210 (99%)
 Frame = +3

Query: 3    KFYGNLGDAAVKMARDALLNYVDWESQIEPWQSPILSDTTLPDWYRVTLFNELYYFNSGG 182
            KFYGNLGDAAVKMARDALLNYVDWESQIE WQSPILSDTTLPDWYRVTLFNELYYFNSGG
Sbjct: 380  KFYGNLGDAAVKMARDALLNYVDWESQIEAWQSPILSDTTLPDWYRVTLFNELYYFNSGG 439

Query: 183  TIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLE 362
            TIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLE
Sbjct: 440  TIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLE 499

Query: 363  GIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKL 542
            GIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKL
Sbjct: 500  GIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKL 559

Query: 543  LGSVPHDIGLNDPWLELNEYNFFNTDRWKD 632
            LGSVPHDIGLNDPWLELNEYNFFNTDRWKD
Sbjct: 560  LGSVPHDIGLNDPWLELNEYNFFNTDRWKD 589

>ref|NP_192744.2| putative protein; protein id: At4g10060.1, supported by cDNA:
           gi_20453180 [Arabidopsis thaliana]
          Length = 531

 Score =  409 bits (1052), Expect = e-113
 Identities = 197/198 (99%), Positives = 197/198 (99%)
 Frame = +3

Query: 39  MARDALLNYVDWESQIEPWQSPILSDTTLPDWYRVTLFNELYYFNSGGTIWTDGLPPKES 218
           MARDALLNYVDWESQIE WQSPILSDTTLPDWYRVTLFNELYYFNSGGTIWTDGLPPKES
Sbjct: 1   MARDALLNYVDWESQIEAWQSPILSDTTLPDWYRVTLFNELYYFNSGGTIWTDGLPPKES 60

Query: 219 IERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLEGIEYLMYNTYDV 398
           IERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLEGIEYLMYNTYDV
Sbjct: 61  IERSKVTNTEQNDIVIDLFQKINAVCEQIYSPQSSNSEENIGQFIYLEGIEYLMYNTYDV 120

Query: 399 HFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKLLGSVPHDIGLND 578
           HFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKLLGSVPHDIGLND
Sbjct: 121 HFYSSFALLSLFPKLALSIQRDFAATVLIQDPTKKKIMSSGEWVTRKLLGSVPHDIGLND 180

Query: 579 PWLELNEYNFFNTDRWKD 632
           PWLELNEYNFFNTDRWKD
Sbjct: 181 PWLELNEYNFFNTDRWKD 198

>pir||T04010 hypothetical protein T5L19.190 - Arabidopsis
           thaliana|gi|4539009|emb|CAB39630.1| putative protein
           [Arabidopsis thaliana]|gi|7267702|emb|CAB78129.1|
           putative protein [Arabidopsis thaliana]
          Length = 750

 Score =  343 bits (881), Expect = 8e-94
 Identities = 166/166 (100%), Positives = 166/166 (100%)
 Frame = +3

Query: 135 YRVTLFNELYYFNSGGTIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSP 314
           YRVTLFNELYYFNSGGTIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSP
Sbjct: 252 YRVTLFNELYYFNSGGTIWTDGLPPKESIERSKVTNTEQNDIVIDLFQKINAVCEQIYSP 311

Query: 315 QSSNSEENIGQFIYLEGIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDP 494
           QSSNSEENIGQFIYLEGIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDP
Sbjct: 312 QSSNSEENIGQFIYLEGIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAATVLIQDP 371

Query: 495 TKKKIMSSGEWVTRKLLGSVPHDIGLNDPWLELNEYNFFNTDRWKD 632
           TKKKIMSSGEWVTRKLLGSVPHDIGLNDPWLELNEYNFFNTDRWKD
Sbjct: 372 TKKKIMSSGEWVTRKLLGSVPHDIGLNDPWLELNEYNFFNTDRWKD 417

>ref|NP_174631.1| hypothetical protein; protein id: At1g33700.1 [Arabidopsis thaliana]
          Length = 905

 Score =  322 bits (826), Expect = 2e-87
 Identities = 151/232 (65%), Positives = 190/232 (81%), Gaps = 22/232 (9%)
 Frame = +3

Query: 3    KFYGNLGDAAVKMARDALLNYVDWESQIEPWQSPILSDTTLPDWYRVTLFNELYYFNSGG 182
            +FYG+LG+AAV MA DALLN+ +WE+QIE WQ+P+L+DTTLP+WYRVTLFNELYYFNSGG
Sbjct: 343  RFYGSLGNAAVAMAHDALLNFPEWETQIEEWQAPVLADTTLPEWYRVTLFNELYYFNSGG 402

Query: 183  TIWTDGLPPKESIE---RSKVT---------NTEQNDIVIDLFQKINAVCEQIYSPQSSN 326
            T+WTDGLPPK+S++   R K++         + +QN++ +D+  +I+AVC QI++P +SN
Sbjct: 403  TMWTDGLPPKQSLDSIGRRKISLGLSTIDKNDQDQNNVALDILGRIDAVCSQIHAPLTSN 462

Query: 327  SE----------ENIGQFIYLEGIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAAT 476
            +           ENIGQF+YLEG++YLMYNTYDVHFYSSFALL LFPK+ LSIQRDFAA 
Sbjct: 463  AALGNTMIQNTTENIGQFLYLEGVQYLMYNTYDVHFYSSFALLMLFPKIELSIQRDFAAA 522

Query: 477  VLIQDPTKKKIMSSGEWVTRKLLGSVPHDIGLNDPWLELNEYNFFNTDRWKD 632
            VL+ D +KK++MSSGE+VTRK+LG+VPHDIGLNDPW ELN YN FNTDRWKD
Sbjct: 523  VLMHDSSKKQVMSSGEFVTRKVLGAVPHDIGLNDPWFELNAYNLFNTDRWKD 574

>gb|AAO42222.1| unknown protein [Arabidopsis thaliana]
          Length = 947

 Score =  320 bits (819), Expect = 1e-86
 Identities = 150/232 (64%), Positives = 189/232 (80%), Gaps = 22/232 (9%)
 Frame = +3

Query: 3    KFYGNLGDAAVKMARDALLNYVDWESQIEPWQSPILSDTTLPDWYRVTLFNELYYFNSGG 182
            +FYG+LG+AAV MA DALLN+ +WE+QIE WQ+P+L+DTTLP+WYRVTLFNELYYFNSGG
Sbjct: 385  RFYGSLGNAAVAMAHDALLNFPEWETQIEEWQAPVLADTTLPEWYRVTLFNELYYFNSGG 444

Query: 183  TIWTDGLPPKESIE---RSKVT---------NTEQNDIVIDLFQKINAVCEQIYSPQSSN 326
            T+WTDGLPPK+S++   R K++         + +QN++ +D+  +I+AVC QI++P +SN
Sbjct: 445  TMWTDGLPPKQSLDSIGRRKISLGLSTIDKNDQDQNNVALDILGRIDAVCSQIHAPLTSN 504

Query: 327  SE----------ENIGQFIYLEGIEYLMYNTYDVHFYSSFALLSLFPKLALSIQRDFAAT 476
            +           ENIGQF+YLEG++YLMYNTY VHFYSSFALL LFPK+ LSIQRDFAA 
Sbjct: 505  AALGNTMIQNTTENIGQFLYLEGVQYLMYNTYGVHFYSSFALLMLFPKIELSIQRDFAAA 564

Query: 477  VLIQDPTKKKIMSSGEWVTRKLLGSVPHDIGLNDPWLELNEYNFFNTDRWKD 632
            VL+ D +KK++MSSGE+VTRK+LG+VPHDIGLNDPW ELN YN FNTDRWKD
Sbjct: 565  VLMHDSSKKQVMSSGEFVTRKVLGAVPHDIGLNDPWFELNAYNLFNTDRWKD 616

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 24948662396
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results