BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= AU237540.f (654 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_566384.1|  expressed protein; protein id: At3g10960.1...   425   e-118
gb|AAM63152.1|  unknown [Arabidopsis thaliana]                    425   e-118
ref|NP_199841.1|  transmembrane transport protein-like; prot...   229   2e-59
ref|NP_596491.1|  hypothetical integral membrane protein [Sc...   202   3e-51
ref|NP_562667.1|  conserved hypothetical protein [Clostridiu...   169   4e-41

>ref|NP_566384.1| expressed protein; protein id: At3g10960.1, supported by cDNA:
           19901., supported by cDNA: gi_20260451 [Arabidopsis
           thaliana]|gi|6016698|gb|AAF01525.1|AC009991_21
           hypothetical protein [Arabidopsis
           thaliana]|gi|20260452|gb|AAM13124.1| unknown protein
           [Arabidopsis thaliana]
          Length = 579

 Score =  425 bits (1092), Expect = e-118
 Identities = 212/213 (99%), Positives = 212/213 (99%)
 Frame = -3

Query: 640 PNTSAXDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 461
           PNTSA DAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS
Sbjct: 341 PNTSAGDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 400

Query: 460 MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI 281
           MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI
Sbjct: 401 MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI 460

Query: 280 TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM 101
           TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM
Sbjct: 461 TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM 520

Query: 100 PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL 2
           PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL
Sbjct: 521 PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL 553

>gb|AAM63152.1| unknown [Arabidopsis thaliana]
          Length = 579

 Score =  425 bits (1092), Expect = e-118
 Identities = 212/213 (99%), Positives = 212/213 (99%)
 Frame = -3

Query: 640 PNTSAXDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 461
           PNTSA DAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS
Sbjct: 341 PNTSAGDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 400

Query: 460 MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI 281
           MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI
Sbjct: 401 MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI 460

Query: 280 TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM 101
           TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM
Sbjct: 461 TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM 520

Query: 100 PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL 2
           PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL
Sbjct: 521 PLTYSVAYGLIGGIGSYVVLHLWDWGEEGLVKL 553

>ref|NP_199841.1| transmembrane transport protein-like; protein id: At5g50300.1
           [Arabidopsis thaliana]|gi|9759032|dbj|BAB09401.1|
           transmembrane transport protein-like [Arabidopsis
           thaliana]
          Length = 547

 Score =  229 bits (585), Expect = 2e-59
 Identities = 107/204 (52%), Positives = 147/204 (71%)
 Frame = -3

Query: 640 PNTSAXDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 461
           P+T   D+ ++YF KIVD H I+ T GA+SF+   K   W A  T  YVD+L TTG LY+
Sbjct: 313 PHTPLGDSNYNYFTKIVDFHKIQSTLGAISFTEFRKSEVWVAFATLFYVDLLGTTGVLYT 372

Query: 460 MARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTAI 281
           MA   GFV++ G F G+Y A++ DA + V+GS LG +    F+ESS G++EGG+TGLTA+
Sbjct: 373 MAEIGGFVED-GKFEGEYAAYLVDAGSSVVGSALGVTTTATFVESSAGLKEGGKTGLTAV 431

Query: 280 TVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMILM 101
            V +YFL +MFFTPL+ ++P WAVGP L++VGVMMM  V +I W + +EA+ AFVT++LM
Sbjct: 432 IVGLYFLASMFFTPLVTNVPRWAVGPSLVMVGVMMMGVVKDIRWGETKEAVTAFVTILLM 491

Query: 100 PLTYSVAYGLIGGIGSYVVLHLWD 29
           PLTYS+A G+I GIG Y+ L ++D
Sbjct: 492 PLTYSIANGIIAGIGIYLALSMYD 515

>ref|NP_596491.1| hypothetical integral membrane protein [Schizosaccharomyces
           pombe]|gi|7490720|pir||T40742 hypothetical integral
           membrane protein - fission yeast  (Schizosaccharomyces
           pombe)|gi|3850113|emb|CAA21902.1| hypothetical integral
           membrane protein [Schizosaccharomyces pombe]
          Length = 625

 Score =  202 bits (514), Expect = 3e-51
 Identities = 104/202 (51%), Positives = 136/202 (66%), Gaps = 1/202 (0%)
 Frame = -3

Query: 640 PNTSAXDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTGTLYS 461
           P+T   D   D+FKK+V    I     A  ++ +  G F  AL+TFLYVDI+D TGTLYS
Sbjct: 291 PHTLTGDYNFDFFKKVVSFRKINRILVAQQWN-VTGGQFAIALITFLYVDIMDMTGTLYS 349

Query: 460 MARFAGFVDEKG-DFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTGLTA 284
           MA +AG VD +  DF G   A++ DA +I IGSL G SPVT FIES +GI  GGRTG+  
Sbjct: 350 MANYAGLVDPRTQDFEGSAVAYIVDALSISIGSLFGCSPVTAFIESGSGISAGGRTGILG 409

Query: 283 ITVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFVTMIL 104
           + V + F +++FF P+ +SIP WA G  L+LVG MMMKS T I+W  + ++IPAF+T+ L
Sbjct: 410 MVVGICFFISLFFAPIFSSIPVWATGSTLVLVGSMMMKSTTLINWSYLGDSIPAFITIAL 469

Query: 103 MPLTYSVAYGLIGGIGSYVVLH 38
           MP TYS+AYGLI GI  Y +L+
Sbjct: 470 MPFTYSIAYGLIAGIICYALLN 491

>ref|NP_562667.1| conserved hypothetical protein [Clostridium
           perfringens]|gi|18145414|dbj|BAB81457.1| conserved
           hypothetical protein [Clostridium perfringens str. 13]
          Length = 465

 Score =  169 bits (427), Expect = 4e-41
 Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 5/211 (2%)
 Frame = -3

Query: 652 GNGVPNTSAXDAAHDYFKK-IVDVHVIKHTAGALSFSGINKG----HFWEALVTFLYVDI 488
           G  + NT A  +   Y    I     I   AG ++FS +       +F   + TFL+VD 
Sbjct: 215 GYALINTEAAASMGIYLPNGIFKFESIAPIAGKVNFSYLTSPQHVFNFITIVFTFLFVDF 274

Query: 487 LDTTGTLYSMARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIRE 308
            DT GTL  +A  A  +D+KG       A M+DA A   G+LLGTS VTV++ES+TG+ E
Sbjct: 275 FDTVGTLIGVASRANMLDKKGRVPNAGKALMTDAIATTAGALLGTSTVTVYVESATGVEE 334

Query: 307 GGRTGLTAITVAVYFLLAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAI 128
           GGRTGLTAIT+   F +AMFF+P+  ++PA A  P LI VG +M+ SV +ID+ D+ +A+
Sbjct: 335 GGRTGLTAITIGALFFVAMFFSPIFVAVPACATAPALIYVGYLMLTSVLKIDFSDITDAV 394

Query: 127 PAFVTMILMPLTYSVAYGLIGGIGSYVVLHL 35
           PAF+ + LMPLTYS+  GL  G+ +YV+L++
Sbjct: 395 PAFLIIALMPLTYSIGDGLTIGVLAYVILNI 425

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 26846930187
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results