BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48609.r
         (386 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB56038.1|  tyrosine decarboxylase [Arabidopsis thaliana]     55   2e-07
ref|NP_179624.2|  putative tyrosine decarboxylase; protein i...    55   3e-07
pir||A84588  probable tyrosine decarboxylase [imported] - Ar...    55   3e-07
dbj|BAB56067.1|  putative tyrosine/DOPA decarboxylase [Oryza...    42   0.001
gb|AAM01094.1|AC092748_32  Putative tyrosine/DOPA decarboxyl...    42   0.001

>emb|CAB56038.1| tyrosine decarboxylase [Arabidopsis thaliana]
          Length = 489

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = -3

Query: 375 RCAIGAPLTEEKHVKEPWKVIQGEASY 295
           RCAIGAPLTEEKHVKE WKVIQ EASY
Sbjct: 459 RCAIGAPLTEEKHVKEAWKVIQEEASY 485



>ref|NP_179624.2| putative tyrosine decarboxylase; protein id: At2g20340.1, supported
           by cDNA: gi_18491208, supported by cDNA: gi_20465924
           [Arabidopsis thaliana]|gi|18491209|gb|AAL69507.1|
           putative tyrosine decarboxylase [Arabidopsis
           thaliana]|gi|20465925|gb|AAM20115.1| putative tyrosine
           decarboxylase [Arabidopsis thaliana]
          Length = 490

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 24/27 (88%), Positives = 25/27 (91%)
 Frame = -3

Query: 375 RCAIGAPLTEEKHVKEPWKVIQGEASY 295
           RCAIGAPLTEEKHVKE WK+IQ EASY
Sbjct: 460 RCAIGAPLTEEKHVKEAWKIIQEEASY 486



>pir||A84588 probable tyrosine decarboxylase [imported] - Arabidopsis
           thaliana|gi|4512701|gb|AAD21754.1| putative tyrosine
           decarboxylase [Arabidopsis thaliana]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 24/27 (88%), Positives = 25/27 (91%)
 Frame = -3

Query: 375 RCAIGAPLTEEKHVKEPWKVIQGEASY 295
           RCAIGAPLTEEKHVKE WK+IQ EASY
Sbjct: 449 RCAIGAPLTEEKHVKEAWKIIQEEASY 475



>dbj|BAB56067.1| putative tyrosine/DOPA decarboxylase [Oryza sativa (japonica
           cultivar-group)]
          Length = 533

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = -3

Query: 375 RCAIGAPLTEEKHVKEPWKVIQGEAS 298
           RCAIG+ LTEE+HV+E WKV+Q  A+
Sbjct: 501 RCAIGSTLTEERHVREAWKVVQERAT 526



>gb|AAM01094.1|AC092748_32 Putative tyrosine/DOPA decarboxylase [Oryza
           sativa]|gi|21671954|gb|AAM74316.1|AC114474_8 Putative
           Tyrosine/DOPA decarboxylase [Oryza sativa (japonica
           cultivar-group)]
          Length = 526

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 16/26 (61%), Positives = 22/26 (84%)
 Frame = -3

Query: 375 RCAIGAPLTEEKHVKEPWKVIQGEAS 298
           RCA+G+ LTEE+HV+E WKV+Q  A+
Sbjct: 491 RCAVGSTLTEERHVREAWKVVQDRAT 516



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 104
effective length of database: 289,927,757
effective search space used: 6958266168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)