BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48460.r
         (302 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181807.1|  putative citrate synthase; protein id: At2...   187   3e-47
ref|NP_191434.1|  citrate synthase -like protein; protein id...   133   7e-31
ref|NP_191433.1|  citrate synthase -like protein; protein id...   132   9e-31
sp|P49299|CYSZ_CUCMA  CITRATE SYNTHASE, GLYOXYSOMAL PRECURSO...   112   2e-24
gb|ZP_00019278.1|  hypothetical protein [Chloroflexus aurant...    55   2e-07

>ref|NP_181807.1| putative citrate synthase; protein id: At2g42790.1, supported by
           cDNA: 17416., supported by cDNA: gi_15081643
           [Arabidopsis thaliana]|gi|25291251|pir||C84858 probable
           citrate synthase [imported] - Arabidopsis
           thaliana|gi|4512675|gb|AAD21729.1| putative citrate
           synthase [Arabidopsis
           thaliana]|gi|15081644|gb|AAK82477.1| At2g42790/F7D19.21
           [Arabidopsis thaliana]|gi|21700853|gb|AAM70550.1|
           At2g42790/F7D19.21 [Arabidopsis thaliana]
          Length = 509

 Score =  187 bits (475), Expect = 3e-47
 Identities = 94/97 (96%), Positives = 94/97 (96%)
 Frame = +3

Query: 12  MEISERVRARLAVLSGHLSEGIQDSPAIERWCTSADTSVAPLXSLKGTLTIVDERTGKNY 191
           MEISERVRARLAVLSGHLSEG QDSPAIERWCTSADTSVAPL SLKGTLTIVDERTGKNY
Sbjct: 1   MEISERVRARLAVLSGHLSEGKQDSPAIERWCTSADTSVAPLGSLKGTLTIVDERTGKNY 60

Query: 192 KVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLTT 302
           KVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYL T
Sbjct: 61  KVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLNT 97



>ref|NP_191434.1| citrate synthase -like protein; protein id: At3g58750.1
           [Arabidopsis thaliana]|gi|11268301|pir||T49158 citrate
           synthase-like protein - Arabidopsis
           thaliana|gi|7630070|emb|CAB88292.1| citrate
           synthase-like protein [Arabidopsis thaliana]
          Length = 514

 Score =  133 bits (334), Expect = 7e-31
 Identities = 70/102 (68%), Positives = 78/102 (75%), Gaps = 5/102 (4%)
 Frame = +3

Query: 12  MEISERVRARLAVLSGHLSEGI-----QDSPAIERWCTSADTSVAPLXSLKGTLTIVDER 176
           MEIS+RV+ARLAVL+ HL+        Q  PAI  WCTSA  + AP  SLKG LTIVDER
Sbjct: 1   MEISQRVKARLAVLTAHLAVSDTVGLEQVLPAIAPWCTSAHITAAPHGSLKGNLTIVDER 60

Query: 177 TGKNYKVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLTT 302
           TGK Y+VPVS+ GTVKAVD KKI TGK+DKGLKLYDPGYL T
Sbjct: 61  TGKKYQVPVSEHGTVKAVDLKKITTGKDDKGLKLYDPGYLNT 102



>ref|NP_191433.1| citrate synthase -like protein; protein id: At3g58740.1, supported
           by cDNA: gi_20466289 [Arabidopsis
           thaliana]|gi|11268303|pir||T49157 citrate synthase-like
           protein - Arabidopsis
           thaliana|gi|7630069|emb|CAB88291.1| citrate
           synthase-like protein [Arabidopsis
           thaliana]|gi|20466290|gb|AAM20462.1| citrate
           synthase-like protein [Arabidopsis
           thaliana]|gi|25084123|gb|AAN72180.1| citrate
           synthase-like protein [Arabidopsis thaliana]
          Length = 480

 Score =  132 bits (333), Expect = 9e-31
 Identities = 70/99 (70%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
 Frame = +3

Query: 12  MEISERVRARLAVLSGHL--SEGIQDSPAIERWCTSADTSVAPLXSLKGTLTIVDERTGK 185
           MEISER RARLAVL+ HL  SE  Q  PAIE WCTSA  + AP  SLKG L IVDERTG 
Sbjct: 1   MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGN 60

Query: 186 NYKVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLTT 302
            Y+VPVS+ GTVK VD KKI TGK+DKGL LYDPGYL T
Sbjct: 61  EYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNT 99



>sp|P49299|CYSZ_CUCMA CITRATE SYNTHASE, GLYOXYSOMAL PRECURSOR
           (GCS)|gi|1084323|pir||S53007 citrate synthase -
           cucurbit|gi|975633|dbj|BAA07328.1| glyoxysomal citrate
           synthase [Cucurbita cv. Kurokawa Amakuri]
          Length = 516

 Score =  112 bits (279), Expect = 2e-24
 Identities = 59/98 (60%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
 Frame = +3

Query: 21  SERVRARLAVLSGHLSEGIQDSP----AIERWCTSADTSVAPLXSLKGTLTIVDERTGKN 188
           S   R RLAVL+ HLS    + P    ++E  C SA T VAP   +KGTLTIVDERTGK 
Sbjct: 10  SNVARHRLAVLAAHLSAASLEPPVMASSLEAHCVSAQTMVAPPELVKGTLTIVDERTGKR 69

Query: 189 YKVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLTT 302
           Y+V VS++GT+KA D KKI TG  DKGLKLYDPGYL T
Sbjct: 70  YQVQVSEEGTIKATDLKKITTGPNDKGLKLYDPGYLNT 107



>gb|ZP_00019278.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 430

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 36/52 (69%)
 Frame = +3

Query: 147 KGTLTIVDERTGKNYKVPVSDDGTVKAVDFKKIVTGKEDKGLKLYDPGYLTT 302
           + TLT+ D RTGK Y++P+ ++ T++A D ++I   ++D GL  YDP YL T
Sbjct: 5   RNTLTVTDNRTGKTYEIPI-ENNTIRATDLRQIKVSEDDFGLMSYDPAYLNT 55



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 76
effective length of database: 327,421,045
effective search space used: 7858105080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)