BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48421.r
(216 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173419.1| unknown protein; protein id: At1g19900.1, ... 45 3e-04
pir||D86332 hypothetical protein F6F9.4 [imported] - Arabid... 45 3e-04
ref|NP_177692.1| unknown protein; protein id: At1g75620.1 [... 41 0.004
pir||H86278 F14L17.20 protein - Arabidopsis thaliana|gi|726... 31 5.2
>ref|NP_173419.1| unknown protein; protein id: At1g19900.1, supported by cDNA:
gi_16604506 [Arabidopsis
thaliana]|gi|16604507|gb|AAL24259.1| At1g19900/F6F9_4
[Arabidopsis thaliana]
Length = 548
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2
Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
PG YM VVNQDIPSEGVWVKLE
Sbjct: 526 PGYYMIFVVNQDIPSEGVWVKLE 548
>pir||D86332 hypothetical protein F6F9.4 [imported] - Arabidopsis
thaliana|gi|10086483|gb|AAG12543.1|AC007797_3 Unknown
Protein [Arabidopsis thaliana]
Length = 504
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -2
Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
PG YM VVNQDIPSEGVWVKLE
Sbjct: 482 PGYYMIFVVNQDIPSEGVWVKLE 504
>ref|NP_177692.1| unknown protein; protein id: At1g75620.1 [Arabidopsis
thaliana]|gi|9369366|gb|AAF87115.1|AC006434_11 F10A5.18
[Arabidopsis thaliana]
Length = 547
Score = 41.2 bits (95), Expect = 0.004
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = -2
Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
PG YM VVNQDIPSEG+WV+L+
Sbjct: 525 PGYYMVFVVNQDIPSEGLWVRLQ 547
>pir||H86278 F14L17.20 protein - Arabidopsis
thaliana|gi|7262685|gb|AAF43943.1|AC012188_20 Weak
similarity to glyoxal oxidase (glx2) from Phanerochaete
chrysosporium gb|L47287. [Arabidopsis thaliana]
Length = 564
Score = 30.8 bits (68), Expect = 5.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 200 PG*YMXIVVNQDIPSEGVWVKL 135
PG YM VV++ IPS VWVK+
Sbjct: 543 PGYYMMFVVHRGIPSVAVWVKI 564
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 47
effective length of database: 366,253,379
effective search space used: 8790081096
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)