BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48406.r
         (284 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_540609.1|  FLAGELLAR PROTEIN FLGJ [Brucella melitensi...    34   0.43 
gb|AAH11959.1|AAH11959  hypothetical protein MGC10765 [Homo ...    31   3.7  
dbj|BAB15574.1|  unnamed protein product [Homo sapiens]            31   3.7  
dbj|BAC11043.1|  unnamed protein product [Homo sapiens]            31   3.7  
ref|NP_694807.1|  hypothetical protein MGC11993 [Mus musculu...    31   4.8  

>ref|NP_540609.1| FLAGELLAR PROTEIN FLGJ [Brucella
           melitensis]|gi|25526010|pir||AF3463 flagellar protein
           flgJ [imported] - Brucella melitensis  (strain
           16M)|gi|17983716|gb|AAL52873.1| FLAGELLAR PROTEIN FLGJ
           [Brucella melitensis]
          Length = 638

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 49  NLKNVLKSARTSTQKKXEGKTLSSGGRIXFIP 144
           NLKN L+  RTST+ K  GK+  SG R+ F P
Sbjct: 601 NLKNPLEGFRTSTKDKTPGKSGVSGNRLRFNP 632



>gb|AAH11959.1|AAH11959 hypothetical protein MGC10765 [Homo sapiens]
          Length = 258

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (62%)
 Frame = +1

Query: 61  VLKSARTSTQKKXEGKTLSSGGRIXFIPCYNRDSHSSQ 174
           +L++ RT++       + SSG R+   PC++ DS+SS+
Sbjct: 40  ILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSE 77



>dbj|BAB15574.1| unnamed protein product [Homo sapiens]
          Length = 258

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (62%)
 Frame = +1

Query: 61  VLKSARTSTQKKXEGKTLSSGGRIXFIPCYNRDSHSSQ 174
           +L++ RT++       + SSG R+   PC++ DS+SS+
Sbjct: 40  ILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSE 77



>dbj|BAC11043.1| unnamed protein product [Homo sapiens]
          Length = 412

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/38 (34%), Positives = 24/38 (62%)
 Frame = +1

Query: 61  VLKSARTSTQKKXEGKTLSSGGRIXFIPCYNRDSHSSQ 174
           +L++ RT++       + SSG R+   PC++ DS+SS+
Sbjct: 194 ILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSE 231



>ref|NP_694807.1| hypothetical protein MGC11993 [Mus
           musculus]|gi|22268141|gb|AAH27317.1| Similar to
           hypothetical protein MGC10765 [Mus musculus]
          Length = 412

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 12/38 (31%), Positives = 24/38 (62%)
 Frame = +1

Query: 61  VLKSARTSTQKKXEGKTLSSGGRIXFIPCYNRDSHSSQ 174
           +L++ RT++       + SSG R+   PC++ DS+S++
Sbjct: 194 ILRARRTTSSSDLTTTSSSSGSRVSGSPCHHNDSNSTE 231



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 70
effective length of database: 335,455,321
effective search space used: 8050927704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)