BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48403.x
         (248 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ZP_00009851.1|  hypothetical protein [Rhodopseudomonas pa...    30   8.5  

>gb|ZP_00009851.1| hypothetical protein [Rhodopseudomonas palustris]
          Length = 327

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 24  WRSRFPSVVRRRNKRMGKIARSTAYRR 104
           WR  FP   RRR +R G+ + ++ YRR
Sbjct: 3   WRCGFPVAERRRGRRTGQTSPASPYRR 29



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 58
effective length of database: 351,523,873
effective search space used: 8436572952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)