BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48402.r
         (269 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00954  hypothetical protein F20D22.4 - Arabidopsis tha...    68   3e-11



>pir||T00954 hypothetical protein F20D22.4 - Arabidopsis
           thaliana|gi|3142292|gb|AAC16743.1| Contains similarity
           to tetratricopeptide repeat protein gb|U46571 from home
           sapiens.  EST gb|Z47802 and gb|Z48402 come from this
           gene. [Arabidopsis thaliana]
          Length = 358

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 32/36 (88%), Positives = 33/36 (90%)
 Frame = -1

Query: 200 REIRKARRALFCCSMILYIQFLXKTQKIKKSSCECV 93
           R  RKARRALFCCSMILYIQFL KT+KIKKSSCECV
Sbjct: 311 RRNRKARRALFCCSMILYIQFLIKTKKIKKSSCECV 346





  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 65
effective length of database: 342,150,551
effective search space used: 8211613224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)










BLAST Search Results