BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48396.r
(230 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188605.1| branched-chain amino acid aminotransferase... 40 0.006
>ref|NP_188605.1| branched-chain amino acid aminotransferase, putative; protein id:
At3g19710.1, supported by cDNA: 38004., supported by
cDNA: gi_15450616, supported by cDNA: gi_17386157
[Arabidopsis thaliana]|gi|26391664|sp|Q9LE06|BCA4_ARATH
Probable branched-chain amino acid aminotransferase 4
(Atbcat-4)|gi|25327757|pir||T52401 branched-chain amino
acid aminotransferase-like protein [imported] -
Arabidopsis thaliana|gi|8249006|emb|CAB93129.1|
branched-chain amino acid transaminase [Arabidopsis
thaliana]|gi|9294438|dbj|BAB02558.1| branched-chain
amino acid aminotransferase-like protein [Arabidopsis
thaliana]|gi|15450617|gb|AAK96580.1| AT3g19710/MMB12_16
[Arabidopsis
thaliana]|gi|17386158|gb|AAL38625.1|AF446892_1
AT3g19710/MMB12_16 [Arabidopsis thaliana]
Length = 354
Score = 40.4 bits (93), Expect = 0.006
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -3
Query: 210 GRVEDTKGWTVEIDRQG 160
GRVEDTKGWTVEIDRQG
Sbjct: 338 GRVEDTKGWTVEIDRQG 354
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 52
effective length of database: 359,558,149
effective search space used: 8629395576
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)