BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BU634835.x
(712 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P23704|ATPB_NEUCR ATP synthase beta chain, mitochondrial... 431 e-120
ref|NP_593151.1| ATP synthase beta chain, mitochondrial pre... 416 e-115
ref|NP_012655.1| F(1)F(0)-ATPase complex beta subunit, mito... 409 e-113
sp|P49376|ATPB_KLULA ATP synthase beta chain, mitochondrial... 407 e-113
sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial... 407 e-113
>sp|P23704|ATPB_NEUCR ATP synthase beta chain, mitochondrial
precursor|gi|83765|pir||JC1112 H+-transporting
two-sector ATPase (EC 3.6.3.14) beta chain [similarity]
- Neurospora crassa|gi|14126|emb|CAA37756.1| F(1)-ATPase
beta-subunit precursor (519 AA) [Neurospora
crassa]|gi|168763|gb|AAA33562.1| mitochondrial ATPase
beta-subunit|gi|7801084|emb|CAB91479.1| H+-transporting
ATP synthase (EC 3.6.1.34) beta chain [Neurospora
crassa]
Length = 519
Score = 431 bits (1108), Expect = e-120
Identities = 217/236 (91%), Positives = 226/236 (94%)
Frame = +3
Query: 3 DTGSPISIPVGPGTLGRIMNVTGDPIDERGPIKHSKKLPIHADAPAFTDQSTAAEVLVTG 182
DTG+PI+IPVGP TLGRI+NVTGDPIDERGPIK K PIHA+AP F +QST AE+LVTG
Sbjct: 116 DTGAPITIPVGPATLGRIINVTGDPIDERGPIKTDKFRPIHAEAPEFVEQSTTAEILVTG 175
Query: 183 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAEAHGGYSVFTGVGERTREGNDL 362
IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIA+AHGGYSVFTGVGERTREGNDL
Sbjct: 176 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDL 235
Query: 363 YHEMQETKVIQLDGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDD 542
YHEMQET VIQLDG+SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFID+
Sbjct: 236 YHEMQETSVIQLDGDSKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 295
Query: 543 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGLMQERITTTTKGSITSVQAVYVP 710
IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMG MQERITTTTKGSITSVQAVYVP
Sbjct: 296 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGQMQERITTTTKGSITSVQAVYVP 351
>ref|NP_593151.1| ATP synthase beta chain, mitochondrial precursor (EC 3.6.1.34)
[Schizosaccharomyces
pombe]|gi|114565|sp|P22068|ATPB_SCHPO ATP synthase beta
chain, mitochondrial precursor|gi|101037|pir||S17211
H+-transporting two-sector ATPase (EC 3.6.3.14) beta
chain precursor [similarity] - fission yeast
(Schizosaccharomyces pombe)|gi|6433997|emb|CAB60704.1|
Mitochondrial F1-ATPase (beta subunit); similar to S.
cerevisiae ATP2 [Schizosaccharomyces pombe]
Length = 525
Score = 416 bits (1069), Expect = e-115
Identities = 210/236 (88%), Positives = 220/236 (92%)
Frame = +3
Query: 3 DTGSPISIPVGPGTLGRIMNVTGDPIDERGPIKHSKKLPIHADAPAFTDQSTAAEVLVTG 182
DTGSPISIPVGPGTLGRIMNV G+P+DERGPIK K PIHADAP+F +QST E+L TG
Sbjct: 124 DTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETG 183
Query: 183 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAEAHGGYSVFTGVGERTREGNDL 362
IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIA+AHGGYSVFTGVGERTREGNDL
Sbjct: 184 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDL 243
Query: 363 YHEMQETKVIQLDGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDD 542
Y EMQET VI+L+GESK ALVFGQMNEPPGARARVALTGLT+AEYFRD EGQDVLLFID+
Sbjct: 244 YREMQETGVIKLEGESKAALVFGQMNEPPGARARVALTGLTVAEYFRDIEGQDVLLFIDN 303
Query: 543 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGLMQERITTTTKGSITSVQAVYVP 710
IFRFTQAGSEVSALLGRIPSAVGYQPTLA DMG MQERITTT KGSITSVQAVYVP
Sbjct: 304 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVP 359
>ref|NP_012655.1| F(1)F(0)-ATPase complex beta subunit, mitochondrial; Atp2p
[Saccharomyces cerevisiae]|gi|2144519|pir||PWBYB
H+-transporting two-sector ATPase (EC 3.6.3.14) beta
chain precursor - yeast (Saccharomyces
cerevisiae)|gi|1015845|emb|CAA89652.1| ORF YJR121w
[Saccharomyces cerevisiae]|gi|1483632|gb|AAC49475.1|
F1-ATPase beta-subunit
Length = 511
Score = 409 bits (1051), Expect = e-113
Identities = 205/236 (86%), Positives = 220/236 (92%)
Frame = +3
Query: 3 DTGSPISIPVGPGTLGRIMNVTGDPIDERGPIKHSKKLPIHADAPAFTDQSTAAEVLVTG 182
DTG PIS+PVG TLGRI+NV G+PIDERGPIK + PIHAD P+F +QST+AE+L TG
Sbjct: 111 DTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETG 170
Query: 183 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAEAHGGYSVFTGVGERTREGNDL 362
IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIA+AHGG+SVFTGVGERTREGNDL
Sbjct: 171 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDL 230
Query: 363 YHEMQETKVIQLDGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDD 542
Y EM+ET VI L+GESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFID+
Sbjct: 231 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 290
Query: 543 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGLMQERITTTTKGSITSVQAVYVP 710
IFRFTQAGSEVSALLGRIPSAVGYQPTLA DMGL+QERITTT KGS+TSVQAVYVP
Sbjct: 291 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVP 346
>sp|P49376|ATPB_KLULA ATP synthase beta chain, mitochondrial
precursor|gi|1255776|gb|AAA96150.1| F1 ATPase beta
subunit
Length = 505
Score = 407 bits (1047), Expect = e-113
Identities = 205/236 (86%), Positives = 219/236 (91%)
Frame = +3
Query: 3 DTGSPISIPVGPGTLGRIMNVTGDPIDERGPIKHSKKLPIHADAPAFTDQSTAAEVLVTG 182
DTG+PIS+PVG TLGRI+NV G+PIDERGPI + PIHAD P F +QSTAAEVL TG
Sbjct: 105 DTGAPISVPVGRETLGRIINVIGEPIDERGPINSKMRKPIHADPPLFVEQSTAAEVLETG 164
Query: 183 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAEAHGGYSVFTGVGERTREGNDL 362
IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIA+AHGG+SVFTGVGERTREGNDL
Sbjct: 165 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDL 224
Query: 363 YHEMQETKVIQLDGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDD 542
Y EM+ET VI L+G+SKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFID+
Sbjct: 225 YREMKETGVINLEGDSKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 284
Query: 543 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGLMQERITTTTKGSITSVQAVYVP 710
IFRFTQAGSEVSALLGRIPSAVGYQPTLA DMGL+QERITTT KGS+TSVQAVYVP
Sbjct: 285 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVP 340
>sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial
precursor|gi|171110|gb|AAA34444.1| F1-ATPase
beta-subunit precursor
Length = 511
Score = 407 bits (1046), Expect = e-113
Identities = 204/236 (86%), Positives = 219/236 (92%)
Frame = +3
Query: 3 DTGSPISIPVGPGTLGRIMNVTGDPIDERGPIKHSKKLPIHADAPAFTDQSTAAEVLVTG 182
DTG PIS+PVG TLGRI+NV G+PIDERGPIK + PIHAD P+F +QST+AE+L TG
Sbjct: 111 DTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETG 170
Query: 183 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAEAHGGYSVFTGVGERTREGNDL 362
IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIA+AHGG+SVF GVGERTREGNDL
Sbjct: 171 IKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFAGVGERTREGNDL 230
Query: 363 YHEMQETKVIQLDGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDD 542
Y EM+ET VI L+GESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFID+
Sbjct: 231 YREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDN 290
Query: 543 IFRFTQAGSEVSALLGRIPSAVGYQPTLAVDMGLMQERITTTTKGSITSVQAVYVP 710
IFRFTQAGSEVSALLGRIPSAVGYQPTLA DMGL+QERITTT KGS+TSVQAVYVP
Sbjct: 291 IFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYVP 346
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 119
effective length of database: 269,842,067
effective search space used: 31571521839
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)