BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 157709.f
         (623 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568909.1|  Expressed protein; protein id: At5g59515.1...   200   1e-50
ref|NP_200759.1|  putative protein [Arabidopsis thaliana]         134   1e-30
dbj|BAC42834.1|  unknown protein [Arabidopsis thaliana]            84   1e-15
ref|NP_671897.1|  unknown protein; protein id: At2g29125.1 [...    80   3e-14
ref|NP_565910.1|  Expressed protein; protein id: At2g39705.1...    54   2e-06

>ref|NP_568909.1| Expressed protein; protein id: At5g59515.1, supported by cDNA:
           157709. [Arabidopsis
           thaliana]|gi|21553697|gb|AAM62790.1| unknown
           [Arabidopsis thaliana]
          Length = 144

 Score =  200 bits (508), Expect = 1e-50
 Identities = 98/144 (68%), Positives = 98/144 (68%)
 Frame = +1

Query: 16  MDDENLWKVVKKDSIFETTHFSSKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEP 195
           MDDENLWKVVKKDSIFETTHFSSKP                                 EP
Sbjct: 1   MDDENLWKVVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEP 60

Query: 196 IFRRSFSAKPTSSKSPFLSRSGSTKCPVDTXXXXXXXXXXXXXQKGASVTRKCRNMAKEH 375
           IFRRSFSAKPTSSKSPFLSRSGSTKCPVDT             QKGASVTRKCRNMAKEH
Sbjct: 61  IFRRSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEH 120

Query: 376 KSRFYIMKRCVLMLVCWHKHACDS 447
           KSRFYIMKRCVLMLVCWHKHACDS
Sbjct: 121 KSRFYIMKRCVLMLVCWHKHACDS 144



>ref|NP_200759.1| putative protein [Arabidopsis thaliana]
          Length = 78

 Score =  134 bits (336), Expect = 1e-30
 Identities = 69/78 (88%), Positives = 69/78 (88%)
 Frame = -1

Query: 308 MEHLEVEDVSTGHFVEPLLDRNGDFEEVGFAEKLRLKMGSDEEYEVGLVEKLLVKTGXXX 129
           MEHLEVEDVSTGHFVEPLLDRNGDFEEVGFAEKLRLKMGSDEEYEVGLVEKLLVKTG   
Sbjct: 1   MEHLEVEDVSTGHFVEPLLDRNGDFEEVGFAEKLRLKMGSDEEYEVGLVEKLLVKTGFEE 60

Query: 128 XXXXXXEKLRVKTGFEEK 75
                 EKLRVKTGFEEK
Sbjct: 61  EEEVFVEKLRVKTGFEEK 78



>dbj|BAC42834.1| unknown protein [Arabidopsis thaliana]
          Length = 107

 Score = 84.0 bits (206), Expect = 1e-15
 Identities = 40/79 (50%), Positives = 49/79 (61%)
 Frame = +1

Query: 199 FRRSFSAKPTSSKSPFLSRSGSTKCPVDTXXXXXXXXXXXXXQKGASVTRKCRNMAKEHK 378
           F RSFS   +SSK+P   RS STKC   +             +KG S+T+K  ++AKE K
Sbjct: 28  FSRSFSTSASSSKAPAFVRSSSTKCSAPSSSSSSISRSSSKKEKG-SITQKYSSLAKEQK 86

Query: 379 SRFYIMKRCVLMLVCWHKH 435
            RFYIM+RCV MLVCWHKH
Sbjct: 87  GRFYIMRRCVAMLVCWHKH 105



>ref|NP_671897.1| unknown protein; protein id: At2g29125.1 [Arabidopsis
           thaliana]|gi|22530996|gb|AAM97002.1| unknown protein
           [Arabidopsis thaliana]|gi|23197786|gb|AAN15420.1|
           unknown protein [Arabidopsis thaliana]
          Length = 115

 Score = 79.7 bits (195), Expect = 3e-14
 Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
 Frame = +1

Query: 199 FRRSFSAKPTSSKSPFLSRSGSTKCPVDTXXXXXXXXXX-----------XXXQKGASVT 345
           F RSFS   +S+KSP   RS STKC V +                           +S+T
Sbjct: 23  FSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSSSISRSFSRKERRSSSSSSSSIT 82

Query: 346 RKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 435
           +K  ++AKE K+RFYIM+RCV MLVCWHKH
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKH 112



>ref|NP_565910.1| Expressed protein; protein id: At2g39705.1, supported by cDNA:
           27620. [Arabidopsis thaliana]|gi|20197045|gb|AAM14893.1|
           Expressed protein [Arabidopsis
           thaliana]|gi|21555300|gb|AAM63828.1| unknown
           [Arabidopsis thaliana]|gi|26450322|dbj|BAC42277.1|
           unknown protein [Arabidopsis thaliana]
          Length = 87

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +1

Query: 325 QKGASVTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKHACDS 447
           Q   + TRKC  + KE ++RFYIM+RCV+ML+CW  +  DS
Sbjct: 47  QGRCAFTRKCARLVKEQRARFYIMRRCVIMLICWRDNYSDS 87



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 24526814310
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)