BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 14423.f
         (463 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_568065.1|  Expressed protein; protein id: At4g39675.1...   100   5e-21
dbj|BAC04906.1|  unnamed protein product [Homo sapiens]            33   1.0  
ref|NP_011762.1|  RNA polymerase III transcription factor wi...    31   6.8  

>ref|NP_568065.1| Expressed protein; protein id: At4g39675.1, supported by cDNA:
           14423. [Arabidopsis thaliana]|gi|21553444|gb|AAM62537.1|
           unknown [Arabidopsis thaliana]
          Length = 70

 Score =  100 bits (250), Expect = 5e-21
 Identities = 52/70 (74%), Positives = 52/70 (74%)
 Frame = +1

Query: 67  MSSIGASYAHXXXXXXXXXXXXXXXXXXRNFDHDEAHRLPVETSFASGRISNKIYPSRLS 246
           MSSIGASYAH                  RNFDHDEAHRLPVETSFASGRISNKIYPSRLS
Sbjct: 1   MSSIGASYAHLQVMQKKQKEKMKKLEKERNFDHDEAHRLPVETSFASGRISNKIYPSRLS 60

Query: 247 YEQVEFKSQK 276
           YEQVEFKSQK
Sbjct: 61  YEQVEFKSQK 70



>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
          Length = 226

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 17/38 (44%), Positives = 24/38 (62%)
 Frame = -3

Query: 458 PLTLDNINTQIVHFHKTTMTTKIRFRHITHTYIITCKH 345
           PLTL +I+T   H H +T T  +   HITHT+++T  H
Sbjct: 46  PLTLTHIHTH-PHTHISTHTHPLTVTHITHTHLLTHIH 82



>ref|NP_011762.1| RNA polymerase III transcription factor with homology to TFIIB;
           Brf1p [Saccharomyces
           cerevisiae]|gi|135646|sp|P29056|TF3B_YEAST Transcription
           factor IIIB 70 kDa subunit (TFIIIB) (B-related factor)
           (BRF)|gi|322950|pir||A44072 transcription factor IIIB
           chain BRF1 - yeast (Saccharomyces
           cerevisiae)|gi|172897|gb|AAB04945.1| transcription
           factor III B component|gi|172905|gb|AAA35148.1|
           transcription factor IIIB|gi|258516|gb|AAB23865.1| RNA
           polymerase III transcription factor 4, PCF4, pol III
           transcription initiation factor 4=TFIIB homolog
           [Saccharomyces cerevisiae, Peptide, 596
           aa]|gi|1323446|emb|CAA97275.1| ORF YGR246c
           [Saccharomyces cerevisiae]|gi|1702956|emb|CAA68968.1|
           BRF1 [Saccharomyces cerevisiae]
          Length = 596

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 167 MKLIDSLSKHLL----RPEGFLIKSILLVCLMNK*SSNHKSEVQSNEILEEDLQSLLSQ 331
           +KL   +SK  +    RP G     ILL C MN     H   V  + + EE LQ  L++
Sbjct: 203 VKLAQRMSKDWMFEGRRPAGIAGACILLACRMNNLRRTHTEIVAVSHVAEETLQQRLNE 261



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 112
effective length of database: 279,215,389
effective search space used: 11447830949
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)