BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1349.f
         (754 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM61718.1|  unknown [Arabidopsis thaliana]                    224   7e-58
ref|NP_564024.1|  Expressed protein; protein id: At1g17455.1...   224   7e-58
gb|AAF79463.1|AC022492_7  F1L3.15 [Arabidopsis thaliana]|gi|...   222   4e-57
ref|NP_565044.1|  expressed protein; protein id: At1g72630.1...   199   4e-50
pir||H96750  hypothetical protein F28P22.18 [imported] - Ara...   199   4e-50

>gb|AAM61718.1| unknown [Arabidopsis thaliana]
          Length = 114

 Score =  224 bits (572), Expect = 7e-58
 Identities = 114/114 (100%), Positives = 114/114 (100%)
 Frame = +3

Query: 210 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 389
           MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQ HESKQPDNLGRNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 60

Query: 390 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 551
           GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114



>ref|NP_564024.1| Expressed protein; protein id: At1g17455.1, supported by cDNA:
           1349. [Arabidopsis thaliana]
          Length = 114

 Score =  224 bits (572), Expect = 7e-58
 Identities = 113/114 (99%), Positives = 113/114 (99%)
 Frame = +3

Query: 210 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 389
           MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQ HESKQPDNLGRNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 390 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 551
           GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114



>gb|AAF79463.1|AC022492_7 F1L3.15 [Arabidopsis thaliana]|gi|9665116|gb|AAF97300.1|AC007843_3
           Hypothetical protein [Arabidopsis thaliana]
          Length = 141

 Score =  222 bits (566), Expect = 4e-57
 Identities = 112/113 (99%), Positives = 112/113 (99%)
 Frame = +3

Query: 210 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 389
           MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQ HESKQPDNLGRNV
Sbjct: 1   MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query: 390 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRS 548
           GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRS
Sbjct: 61  GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRS 113



>ref|NP_565044.1| expressed protein; protein id: At1g72630.1, supported by cDNA:
           19640., supported by cDNA: gi_14532583 [Arabidopsis
           thaliana]|gi|14532584|gb|AAK64020.1| unknown protein
           [Arabidopsis thaliana]|gi|19310623|gb|AAL85042.1|
           unknown protein [Arabidopsis thaliana]
          Length = 119

 Score =  199 bits (505), Expect = 4e-50
 Identities = 102/115 (88%), Positives = 108/115 (93%), Gaps = 1/115 (0%)
 Frame = +3

Query: 210 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 389
           MEGDV SGFG+R+ MDGKLLQ+FQKSFV VQDILDQNRLLINEINQ HESKQ D+LGRNV
Sbjct: 5   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query: 390 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKA-NQKRFRSG 551
           GLI+ELNNNIR VASLYGDLSHSFARSVDASSEGES+GTLKSDGKA NQKRFRSG
Sbjct: 65  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119



>pir||H96750 hypothetical protein F28P22.18 [imported] - Arabidopsis
           thaliana|gi|12323759|gb|AAG51839.1|AC010926_2
           hypothetical protein; 65517-65170 [Arabidopsis
           thaliana]|gi|21554047|gb|AAM63128.1| unknown
           [Arabidopsis thaliana]
          Length = 115

 Score =  199 bits (505), Expect = 4e-50
 Identities = 102/115 (88%), Positives = 108/115 (93%), Gaps = 1/115 (0%)
 Frame = +3

Query: 210 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQXHESKQPDNLGRNV 389
           MEGDV SGFG+R+ MDGKLLQ+FQKSFV VQDILDQNRLLINEINQ HESKQ D+LGRNV
Sbjct: 1   MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 60

Query: 390 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKA-NQKRFRSG 551
           GLI+ELNNNIR VASLYGDLSHSFARSVDASSEGES+GTLKSDGKA NQKRFRSG
Sbjct: 61  GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 115



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 34905392730
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)