BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 126096.f
(460 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565215.1| Expressed protein; protein id: At1g79615.1... 133 7e-31
pir||D96827 protein F20B17.4 [imported] - Arabidopsis thali... 111 3e-24
gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis th... 111 3e-24
ref|NP_178079.2| sodium/hydrogen exchanger; protein id: At1... 111 3e-24
ref|NP_175839.1| hypothetical protein; protein id: At1g5437... 94 8e-19
>ref|NP_565215.1| Expressed protein; protein id: At1g79615.1, supported by cDNA:
126096. [Arabidopsis
thaliana]|gi|21537279|gb|AAM61620.1| unknown
[Arabidopsis thaliana]
Length = 101
Score = 133 bits (335), Expect = 7e-31
Identities = 68/101 (67%), Positives = 68/101 (67%)
Frame = +2
Query: 80 MTAKDMTEYKREDKHHDLKQNPDSGGXXXXXXXXXXXXXXXXXXXXXHYASTDLKKKLGF 259
MTAKDMTEYKREDKHHDLKQNPDSGG HYASTDLKKKLGF
Sbjct: 1 MTAKDMTEYKREDKHHDLKQNPDSGGLLLLLLTLRVVNRRRNLQLRRHYASTDLKKKLGF 60
Query: 260 LSVXXXXXXXCSHREREIHETGTREIDXXXXXLSEDAFCFL 382
LSV CSHREREIHETGTREID LSEDAFCFL
Sbjct: 61 LSVLLRLLRLCSHREREIHETGTREIDFFFFFLSEDAFCFL 101
>pir||D96827 protein F20B17.4 [imported] - Arabidopsis
thaliana|gi|7715609|gb|AAF68127.1|AC010793_22 F20B17.4
[Arabidopsis thaliana]
Length = 531
Score = 111 bits (278), Expect = 3e-24
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -1
Query: 223 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 59
MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE
Sbjct: 1 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 55
>gb|AAM08407.1|AF490590_1 Na+/H+ exchanger 6 [Arabidopsis thaliana]
Length = 525
Score = 111 bits (278), Expect = 3e-24
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -1
Query: 223 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 59
MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE
Sbjct: 1 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 55
>ref|NP_178079.2| sodium/hydrogen exchanger; protein id: At1g79610.1 [Arabidopsis
thaliana]|gi|20268694|gb|AAM14051.1| unknown protein
[Arabidopsis thaliana]|gi|22136726|gb|AAM91682.1|
unknown protein [Arabidopsis thaliana]
Length = 535
Score = 111 bits (278), Expect = 3e-24
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -1
Query: 223 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 59
MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE
Sbjct: 1 MSSELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 55
>ref|NP_175839.1| hypothetical protein; protein id: At1g54370.1 [Arabidopsis
thaliana]
Length = 487
Score = 93.6 bits (231), Expect = 8e-19
Identities = 45/52 (86%), Positives = 48/52 (91%)
Frame = -1
Query: 214 ELQISPAIHDPQGQEKQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPE 59
E+ ISP HDPQGQ KQQQAAGVGILLQIMMLVLSFVLGHVLRRH+F+YLPE
Sbjct: 3 EVMISPVEHDPQGQVKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPE 54
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 112
effective length of database: 279,215,389
effective search space used: 11168615560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)