BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY091152.f
(1940 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86339 protein F2D10.18 [imported] - Arabidopsis thali... 702 0.0
ref|NP_564122.1| high mobility group protein (HMG1), putati... 463 e-129
ref|NP_173518.1| hypothetical protein; protein id: At1g2094... 435 e-120
ref|NP_173450.1| hypothetical protein; protein id: At1g2024... 357 5e-97
pir||B86336 hypothetical protein F14O10.14 [imported] - Ara... 357 5e-97
>pir||F86339 protein F2D10.18 [imported] - Arabidopsis
thaliana|gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18
[Arabidopsis thaliana]
Length = 662
Score = 702 bits (1813), Expect = 0.0
Identities = 342/375 (91%), Positives = 342/375 (91%)
Frame = +1
Query: 166 FRSEPQAMAMIRCTNKSFKSYLTDPRFGPQYPSWVRPTLINIWSSNKSLIFCQPLVYSCD 345
FRSEPQAMAMIRCTNKSFKSYLTDPRFGPQYPSWVRPTLINIWSSNKSLIFCQPLVYSCD
Sbjct: 17 FRSEPQAMAMIRCTNKSFKSYLTDPRFGPQYPSWVRPTLINIWSSNKSLIFCQPLVYSCD 76
Query: 346 YMSLGNKAEFINDRCYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSGSKLLPHIVGGV 525
YMSLGNKAEFINDRCYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSGSKLLPHIVGGV
Sbjct: 77 YMSLGNKAEFINDRCYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSGSKLLPHIVGGV 136
Query: 526 EKADPYDPDGPLVRTERAMCVGFVVDQC*ITKIFKIVCILEMETKYRFEISDGDSWRXXX 705
EKADPYDPDGPLVRTERAMCVGFV METKYRFEISDGDSWR
Sbjct: 137 EKADPYDPDGPLVRTERAMCVGFV-----------------METKYRFEISDGDSWRLSK 179
Query: 706 XXXXXXXXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDTKVLF 885
RMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDTKVLF
Sbjct: 180 TTLTTSSKSGLKKRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDTKVLF 239
Query: 886 AANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDGKCLV 1065
AANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDGKCLV
Sbjct: 240 AANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDGKCLV 299
Query: 1066 VREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKPSFFSIEDDEQTKVLVPSDD 1245
VREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKPSFFSIEDDEQTKVLVPSDD
Sbjct: 300 VREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKPSFFSIEDDEQTKVLVPSDD 359
Query: 1246 QRLSYLTTIMEMIQP 1290
QRLSYLTTIMEMIQP
Sbjct: 360 QRLSYLTTIMEMIQP 374
>ref|NP_564122.1| high mobility group protein (HMG1), putative; protein id: At1g20690.1
[Arabidopsis thaliana]
Length = 240
Score = 463 bits (1191), Expect = e-129
Identities = 224/240 (93%), Positives = 224/240 (93%)
Frame = +1
Query: 649 METKYRFEISDGDSWRXXXXXXXXXXXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETE 828
METKYRFEISDGDSWR RMKPVYVDGNLHWLRNDWSIIAFNPETE
Sbjct: 1 METKYRFEISDGDSWRLSKTTLTTSSKSGLKKRMKPVYVDGNLHWLRNDWSIIAFNPETE 60
Query: 829 QARLIPCSFHPTPDTKVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSM 1008
QARLIPCSFHPTPDTKVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSM
Sbjct: 61 QARLIPCSFHPTPDTKVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSM 120
Query: 1009 EESDLECWNVVAYDGKCLVVREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKP 1188
EESDLECWNVVAYDGKCLVVREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKP
Sbjct: 121 EESDLECWNVVAYDGKCLVVREKMIRSSDIELHVYDMEADSWGVFETAKCWSQDFYKFKP 180
Query: 1189 SFFSIEDDEQTKVLVPSDDQRLSYLTTIMEMIQPGKLSHCLIILSQFIILNHPTPLLISF 1368
SFFSIEDDEQTKVLVPSDDQRLSYLTTIMEMIQPGKLSHCLIILSQFIILNHPTPLLISF
Sbjct: 181 SFFSIEDDEQTKVLVPSDDQRLSYLTTIMEMIQPGKLSHCLIILSQFIILNHPTPLLISF 240
>ref|NP_173518.1| hypothetical protein; protein id: At1g20940.1 [Arabidopsis
thaliana]|gi|25372935|pir||C86342 F9H16.7 protein -
Arabidopsis thaliana|gi|4836895|gb|AAD30598.1|AC007369_8
Hypothetical protein [Arabidopsis thaliana]
Length = 414
Score = 435 bits (1118), Expect = e-120
Identities = 224/386 (58%), Positives = 269/386 (69%), Gaps = 9/386 (2%)
Frame = +1
Query: 166 FRSEPQAMAMIRCTNKSFKSYLTDPRFGPQYPSWVRPTLINIWSSNKSLIFCQPLVYSCD 345
FR EP++MAM+RCTN S KSYL+DPRFGP+YPSWVRP+L N+ S + + C PLV SCD
Sbjct: 29 FRLEPKSMAMMRCTNNSIKSYLSDPRFGPEYPSWVRPSLFNLGSYGATYVCCHPLVSSCD 88
Query: 346 YMSLGNKAEFINDR--CYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSGSKLLPHIVG 519
YMS GN E + CYIFGSCSGLLLLYIG F+ NPLTK+FRI+DHSGSKL+P IV
Sbjct: 89 YMSPGNGVELFDGSADCYIFGSCSGLLLLYIGCLFVANPLTKRFRILDHSGSKLIPMIVN 148
Query: 520 GVEK--ADPYDPDGPLVRTERAMCVGFVVDQC*ITKIFKIVCILEMETKYRFEISDGDSW 693
G K + P G + TERAMCVGF V++ TK FKIV ILEME Y FEI++GDSW
Sbjct: 149 GGLKGLSGISYPGGNVACTERAMCVGFAVNRNLTTKRFKIVGILEMENVYGFEINEGDSW 208
Query: 694 RXXXXXXXXXXXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDT 873
R RMKPVY+D LHWLRND SI++FNPETEQA LIP FH PDT
Sbjct: 209 RLSETSITTSSKSDLTTRMKPVYLDNTLHWLRNDGSIMSFNPETEQACLIPSIFHREPDT 268
Query: 874 KVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDG 1053
K+LFA + + N LTLISGT + ISVYTL+ HKWTL + KN+S+EE L WN+ YDG
Sbjct: 269 KLLFAESVKINRLTLISGTIETISVYTLVENHKWTLTRRIKNISIEEETLVYWNIAMYDG 328
Query: 1054 KCLVVREKMIRSSDIE--LHVYDMEADSWGVFETAKCWS---QDFYKFKPSFFSIEDDEQ 1218
KCLVVR K + + LHVYDMEA+SWGV + W +DFYK PS F +E+DEQ
Sbjct: 329 KCLVVRVKKMGLEPLASVLHVYDMEANSWGVLVSTLAWPNCVRDFYKLTPSLFFVEEDEQ 388
Query: 1219 TKVLVPSDDQRLSYLTTIMEMIQPGK 1296
KVLV S+D+R+SY+ +IM +I K
Sbjct: 389 QKVLVASNDRRISYINSIMGLIDTTK 414
>ref|NP_173450.1| hypothetical protein; protein id: At1g20240.1 [Arabidopsis thaliana]
Length = 566
Score = 357 bits (915), Expect = 5e-97
Identities = 191/331 (57%), Positives = 222/331 (66%), Gaps = 3/331 (0%)
Frame = +1
Query: 313 IFCQPLVYSCDYMSLGNKAEFINDRCYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSG 492
IFCQPLV S D MS N+ + CYIFGSCSGLLLLYIG F+VNPLTK+FR+ +HSG
Sbjct: 246 IFCQPLVSSRDSMSPENEVNLSREPCYIFGSCSGLLLLYIGGLFVVNPLTKRFRLFEHSG 305
Query: 493 SKLLPHIVGGVEKADPYDPDGPLVRTERAMCVGFVVDQC*ITKIFKIVCILEMETKYRFE 672
SKLLP IVGG D + ER MCVGF V+ TK FKIVCI EM T Y FE
Sbjct: 306 SKLLPIIVGG---------DRNVAGRERGMCVGFTVNGNRTTKRFKIVCIHEMGTVYSFE 356
Query: 673 ISDGDSWRXXXXXXXXXXXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCS 852
+SDG SWR +MK VY + LHWLRND SII FNPETEQARLIP
Sbjct: 357 LSDGYSWRLSETTVTASSKSNLTVQMKHVYFNNTLHWLRNDGSIITFNPETEQARLIPSI 416
Query: 853 FHPTPDTKVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECW 1032
FH P+ K+LFAA++ N L LISGTK+ ISVYTLL +WT+ SQ KNVSM+ES+L CW
Sbjct: 417 FHQEPEMKLLFAADNNINRLILISGTKEEISVYTLLDNSEWTVTSQIKNVSMKESELVCW 476
Query: 1033 NVVAYDGKCLVVREKMIRSSDIELHVYDMEADSWGVFETAKCWS---QDFYKFKPSFFSI 1203
N+V YDGK LVVRE M S + +HVYDME SW V + K WS +DFYKF PS F +
Sbjct: 477 NIVVYDGKHLVVRE-MKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRDFYKFTPSLFFV 535
Query: 1204 EDDEQTKVLVPSDDQRLSYLTTIMEMIQPGK 1296
E+DEQ KV V S+D+R+ YLT IM +I K
Sbjct: 536 EEDEQQKVTVASNDKRIPYLTAIMGLIDTNK 566
Score = 218 bits (554), Expect = 3e-55
Identities = 127/239 (53%), Positives = 150/239 (62%), Gaps = 4/239 (1%)
Frame = +1
Query: 580 MCVGFVVDQC*ITKIFKIVCILEMETKYRFEISDGDSWRXXXXXXXXXXXXXXXXRMKPV 759
MCVGF V + T FKIVCILE +T YRFEISDG SWR MKPV
Sbjct: 1 MCVGFAVTRNRTTMRFKIVCILETQTLYRFEISDGYSWRLSETTITPSSKSDLTTLMKPV 60
Query: 760 YVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDTKVLFAANDETNLLTLISGTKKA 939
Y+D LHWLRND SIIAFNPETE+ARLIP F LFAAN+ N LTLIS T K
Sbjct: 61 YLDNTLHWLRNDGSIIAFNPETEEARLIPSRFR-FDHRNTLFAANENINRLTLISKTVKR 119
Query: 940 ISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDGKCLVVRE-KMIRSSDIELHVYD 1116
ISVYTLL KW LA + KN+SM++ D+ NVVAYD KCLV+RE K I+ + +HVYD
Sbjct: 120 ISVYTLLEDSKWALAKRIKNISMDKRDIRYSNVVAYDDKCLVLREFKDIKLGSV-VHVYD 178
Query: 1117 MEADSWGVFET--AKCWSQDFYKFKPS-FFSIEDDEQTKVLVPSDDQRLSYLTTIMEMI 1284
ME ++W V Q YK PS FF EDDE+ KV+V S+DQ + YL ++ +I
Sbjct: 179 METNTWRVLGAICQHATVQKLYKITPSLFFVEEDDEKHKVVVASNDQHI-YLNAVLGVI 236
>pir||B86336 hypothetical protein F14O10.14 [imported] - Arabidopsis
thaliana|gi|9558600|gb|AAF88163.1|AC026234_14 Contains
similarity to a hypothetical protein F9H16.7 gi|4836895
from Arabidopsis thaliana BAC F9H16 gb|AC007369
Length = 682
Score = 357 bits (915), Expect = 5e-97
Identities = 191/331 (57%), Positives = 222/331 (66%), Gaps = 3/331 (0%)
Frame = +1
Query: 313 IFCQPLVYSCDYMSLGNKAEFINDRCYIFGSCSGLLLLYIGHFFIVNPLTKKFRIVDHSG 492
IFCQPLV S D MS N+ + CYIFGSCSGLLLLYIG F+VNPLTK+FR+ +HSG
Sbjct: 362 IFCQPLVSSRDSMSPENEVNLSREPCYIFGSCSGLLLLYIGGLFVVNPLTKRFRLFEHSG 421
Query: 493 SKLLPHIVGGVEKADPYDPDGPLVRTERAMCVGFVVDQC*ITKIFKIVCILEMETKYRFE 672
SKLLP IVGG D + ER MCVGF V+ TK FKIVCI EM T Y FE
Sbjct: 422 SKLLPIIVGG---------DRNVAGRERGMCVGFTVNGNRTTKRFKIVCIHEMGTVYSFE 472
Query: 673 ISDGDSWRXXXXXXXXXXXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCS 852
+SDG SWR +MK VY + LHWLRND SII FNPETEQARLIP
Sbjct: 473 LSDGYSWRLSETTVTASSKSNLTVQMKHVYFNNTLHWLRNDGSIITFNPETEQARLIPSI 532
Query: 853 FHPTPDTKVLFAANDETNLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECW 1032
FH P+ K+LFAA++ N L LISGTK+ ISVYTLL +WT+ SQ KNVSM+ES+L CW
Sbjct: 533 FHQEPEMKLLFAADNNINRLILISGTKEEISVYTLLDNSEWTVTSQIKNVSMKESELVCW 592
Query: 1033 NVVAYDGKCLVVREKMIRSSDIELHVYDMEADSWGVFETAKCWS---QDFYKFKPSFFSI 1203
N+V YDGK LVVRE M S + +HVYDME SW V + K WS +DFYKF PS F +
Sbjct: 593 NIVVYDGKHLVVRE-MKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRDFYKFTPSLFFV 651
Query: 1204 EDDEQTKVLVPSDDQRLSYLTTIMEMIQPGK 1296
E+DEQ KV V S+D+R+ YLT IM +I K
Sbjct: 652 EEDEQQKVTVASNDKRIPYLTAIMGLIDTNK 682
Score = 332 bits (852), Expect = 1e-89
Identities = 197/371 (53%), Positives = 233/371 (62%), Gaps = 8/371 (2%)
Frame = +1
Query: 196 IRCTNKSFKSYLTDPRFGPQYPSWVRPTLINIWSSNKSLIFCQPLVYSCDYMSLGNKAE- 372
+RCTNK F+SYL+ P++ +Y WVRP+ NI IFCQP V SCD MS G K +
Sbjct: 1 MRCTNKYFQSYLSGPKY-KKYTFWVRPSFFNISIFGSCHIFCQPSVSSCDSMSQGKKIDC 59
Query: 373 --FINDRCYIFGSCSGLLLL-YIGHFFIVNPLTKKFRIVDHSGSKLLPHIVGGVEKADPY 543
+RCYIFGSCSGLLLL YIG FI NP+TK+FRI+DHSGSKL+P I AD
Sbjct: 60 NVLTTERCYIFGSCSGLLLLSYIGGLFIANPVTKQFRILDHSGSKLIPTI------ADHK 113
Query: 544 DPDGPLVRTERAMCVGFVVDQC*ITKIFKIVCILEMETKYRFEISDGDSWRXXXXXXXXX 723
D RAMCVGF V + T FKIVCILE +T YRFEISDG SWR
Sbjct: 114 D---------RAMCVGFAVTRNRTTMRFKIVCILETQTLYRFEISDGYSWRLSETTITPS 164
Query: 724 XXXXXXXRMKPVYVDGNLHWLRNDWSIIAFNPETEQARLIPCSFHPTPDTKVLFAANDET 903
MKPVY+D LHWLRND SIIAFNPETE+ARLIP F LFAAN+
Sbjct: 165 SKSDLTTLMKPVYLDNTLHWLRNDGSIIAFNPETEEARLIPSRFR-FDHRNTLFAANENI 223
Query: 904 NLLTLISGTKKAISVYTLLGYHKWTLASQFKNVSMEESDLECWNVVAYDGKCLVVRE-KM 1080
N LTLIS T K ISVYTLL KW LA + KN+SM++ D+ NVVAYD KCLV+RE K
Sbjct: 224 NRLTLISKTVKRISVYTLLEDSKWALAKRIKNISMDKRDIRYSNVVAYDDKCLVLREFKD 283
Query: 1081 IRSSDIELHVYDMEADSWGVFET--AKCWSQDFYKFKPS-FFSIEDDEQTKVLVPSDDQR 1251
I+ + +HVYDME ++W V Q YK PS FF EDDE+ KV+V S+DQ
Sbjct: 284 IKLGSV-VHVYDMETNTWRVLGAICQHATVQKLYKITPSLFFVEEDDEKHKVVVASNDQH 342
Query: 1252 LSYLTTIMEMI 1284
+ YL ++ +I
Sbjct: 343 I-YLNAVLGVI 352
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 130
effective length of database: 255,112,561
effective search space used: 131638081476
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)