BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 16760.f
         (498 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN40688.1|  putative plant defensin SPI1B [Picea abies]        35   0.44 
pir||T14866  probable gamma-thionin precursor SPI1 - Norway ...    35   0.58 
gb|AAN33116.1|  beta-defensin 108 [Homo sapiens]                   33   2.2  
sp|Q8NET1|D108_HUMAN  Beta-defensin 108 precursor (Beta-defe...    32   3.8  
gb|EAA10769.1|  agCP5717 [Anopheles gambiae str. PEST]             32   4.9  

>gb|AAN40688.1| putative plant defensin SPI1B [Picea abies]
          Length = 83

 Score = 35.0 bits (79), Expect = 0.44
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +1

Query: 73  LVILLFILIGMTQGKRKHPCDLKNPSKRAPPATCNKPNGAILCGDFCLHEGYNIGKCVMR 252
           L++LL I IGM Q +       K PS +      ++ N    C + C  EG+  G C   
Sbjct: 15  LLVLLVISIGMMQLEPAEGRTCKTPSGKFKGVCASRNN----CKNVCQTEGFPSGSCDFH 70

Query: 253 RTGKACICSQ 282
              + C CS+
Sbjct: 71  VANRKCYCSK 80



>pir||T14866 probable gamma-thionin precursor SPI1 - Norway
           spruce|gi|1360108|emb|CAA62761.1| putative gamma-thionin
           protein [Picea abies]
          Length = 83

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 22/72 (30%), Positives = 31/72 (42%)
 Frame = +1

Query: 67  IRLVILLFILIGMTQGKRKHPCDLKNPSKRAPPATCNKPNGAILCGDFCLHEGYNIGKCV 246
           I L++LL I IGM Q +       K PS +      +  N    C + C  EG+  G C 
Sbjct: 13  IFLLVLLVISIGMMQLELAEGRTCKTPSGKFKGVCASSNN----CKNVCQTEGFPSGSCD 68

Query: 247 MRRTGKACICSQ 282
                + C CS+
Sbjct: 69  FHVANRKCYCSK 80



>gb|AAN33116.1| beta-defensin 108 [Homo sapiens]
          Length = 59

 Score = 32.7 bits (73), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (55%)
 Frame = +1

Query: 145 PSKRAPPATCNKPNGAILCGDFCLHEGYNIGKCVMRR 255
           P+K      C +PNG+  C DFCL    ++G+C+  R
Sbjct: 19  PAKGKFKEICERPNGS--CRDFCLETEIHVGRCLNSR 53



>sp|Q8NET1|D108_HUMAN Beta-defensin 108 precursor (Beta-defensin 8) (DEFB-8)
          Length = 73

 Score = 32.0 bits (71), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 145 PSKRAPPATCNKPNGAILCGDFCLHEGYNIGKCV 246
           P+K      C +PNG+  C DFCL    ++G+C+
Sbjct: 19  PAKGKFKEICERPNGS--CRDFCLETEIHVGRCL 50



>gb|EAA10769.1| agCP5717 [Anopheles gambiae str. PEST]
          Length = 265

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -1

Query: 246 YTFSYVVAFM*AKIST*YGTIRFITCCRRCSFAWIFKITWMFTLSL 109
           Y  S+ + F+  +++   GT++F +C   CS  W+ ++  +FT++L
Sbjct: 189 YIQSHKLIFVAYQLTNFQGTMKFDSCQAECSVPWLNEVLVLFTVAL 234



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 114
effective length of database: 276,537,297
effective search space used: 14103402147
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)